A systematic literature review on source code similarity measurement and clone detection: techniques, applications, and challenges

Measuring and evaluating source code similarity is a fundamental software engineering activity that embraces a broad range of applications, including but not limited to code recommendation, duplicate code, plagiarism, malware, and smell detection. This paper proposes a systematic literature review and meta-analysis on code similarity measurement and evaluation techniques to shed light on the existing approaches and their characteristics in different applications. We initially found over 10000 articles by querying four digital libraries and ended up with 136 primary studies in the field. The studies were classified according to their methodology, programming languages, datasets, tools, and applications. A deep investigation reveals 80 software tools, working with eight different techniques on five application domains. Nearly 49% of the tools work on Java programs and 37% support C and C++, while there is no support for many programming languages. A noteworthy point was the existence of 12 datasets related to source code similarity measurement and duplicate codes, of which only eight datasets were publicly accessible. The lack of reliable datasets, empirical evaluations, hybrid methods, and focuses on multi-paradigm languages are the main challenges in the field. Emerging applications of code similarity measurement concentrate on the development phase in addition to the maintenance.Comment: 49 pages, 10 figures, 6 table

Management Aspects of Software Clone Detection and Analysis

Copying a code fragment and reusing it by pasting with or without minor modifications is a common practice in software development for improved productivity. As a result, software systems often have similar segments of code, called software clones or code clones. Due to many reasons, unintentional clones may also appear in the source code without awareness of the developer. Studies report that significant fractions (5% to 50%) of the code in typical software systems are cloned. Although code cloning may increase initial productivity, it may cause fault propagation, inflate the code base and increase maintenance overhead. Thus, it is believed that code clones should be identified and carefully managed. This Ph.D. thesis contributes in clone management with techniques realized into tools and large-scale in-depth analyses of clones to inform clone management in devising effective techniques and strategies. To support proactive clone management, we have developed a clone detector as a plug-in to the Eclipse IDE. For clone detection, we used a hybrid approach that combines the strength of both parser-based and text-based techniques. To capture clones that are similar but not exact duplicates, we adopted a novel approach that applies a suffix-tree-based k-difference hybrid algorithm, borrowed from the area of computational biology. Instead of targeting all clones from the entire code base, our tool aids clone-aware development by allowing focused search for clones of any code fragment of the developer's interest. A good understanding on the code cloning phenomenon is a prerequisite to devise efficient clone management strategies. The second phase of the thesis includes large-scale empirical studies on the characteristics (e.g., proportion, types of similarity, change patterns) of code clones in evolving software systems. Applying statistical techniques, we also made fairly accurate forecast on the proportion of code clones in the future versions of software projects. The outcome of these studies expose useful insights into the characteristics of evolving clones and their management implications. Upon identification of the code clones, their management often necessitates careful refactoring, which is dealt with at the third phase of the thesis. Given a large number of clones, it is difficult to optimally decide what to refactor and what not, especially when there are dependencies among clones and the objective remains the minimization of refactoring efforts and risks while maximizing benefits. In this regard, we developed a novel clone refactoring scheduler that applies a constraint programming approach. We also introduced a novel effort model for the estimation of efforts needed to refactor clones in source code. We evaluated our clone detector, scheduler and effort model through comparative empirical studies and user studies. Finally, based on our experience and in-depth analysis of the present state of the art, we expose avenues for further research and development towards a versatile clone management system that we envision

Uncovering Features in Behaviorally Similar Programs

The detection of similar code can support many so ware engineering tasks such as program understanding and program classification. Many excellent approaches have been proposed to detect programs having similar syntactic features. However, these approaches are unable to identify programs dynamically or statistically close to each other, which we call behaviorally similar programs. We believe the detection of behaviorally similar programs can enhance or even automate the tasks relevant to program classification. In this thesis, we will discuss our current approaches to identify programs having similar behavioral features in multiple perspectives. We first discuss how to detect programs having similar functionality. While the definition of a program’s functionality is undecidable, we use inputs and outputs (I/Os) of programs as the proxy of their functionality. We then use I/Os of programs as a behavioral feature to detect which programs are functionally similar: two programs are functionally similar if they share similar inputs and outputs. This approach has been studied and developed in the C language to detect functionally equivalent programs having equivalent I/Os. Nevertheless, some natural problems in Object Oriented languages, such as input generation and comparisons between application-specific data types, hinder the development of this approach. We propose a new technique, in-vivo detection, which uses existing and meaningful inputs to drive applications systematically and then applies a novel similarity model considering both inputs and outputs of programs, to detect functionally similar programs. We develop the tool, HitoshiIO, based on our in-vivo detection. In the subjects that we study, HitoshiIO correctly detect 68.4% of functionally similar programs, where its false positive rate is only 16.6%. In addition to functional I/Os of programs, we attempt to discover programs having similar execution behavior. Again, the execution behavior of a program can be undecidable, so we use instructions executed at run-time as a behavioral feature of a program. We create DyCLINK, which observes program executions and encodes them in dynamic instruction graphs. A vertex in a dynamic instruction graph is an instruction and an edge is a type of dependency between two instructions. The problem to detect which programs have similar executions can then be reduced to a problem of solving inexact graph isomorphism. We propose a link analysis based algorithm, LinkSub, which vectorizes each dynamic instruction graph by the importance of every instruction, to solve this graph isomorphism problem efficiently. In a K Nearest Neighbor (KNN) based program classification experiment, DyCLINK achieves 90 + % precision. Because HitoshiIO and DyCLINK both rely on dynamic analysis to expose program behavior, they have better capability to locate and search for behaviorally similar programs than traditional static analysis tools. However, they suffer from some common problems of dynamic analysis, such as input generation and run-time overhead. These problems may make our approaches challenging to scale. Thus, we create the system, Macneto, which integrates static analysis with machine topic modeling and deep learning to approximate program behaviors from their binaries without truly executing programs. In our deobfuscation experiments considering two commercial obfuscators that alter lexical information and syntax in programs, Macneto achieves 90 + % precision, where the groundtruth is that the behavior of a program before and after obfuscation should be the same. In this thesis, we offer a more extensive view of similar programs than the traditional definitions. While the traditional definitions of similar programs mostly use static features, such as syntax and lexical information, we propose to leverage the power of dynamic analysis and machine learning models to trace/collect behavioral features of pro- grams. These behavioral features of programs can then apply to detect behaviorally similar programs. We believe the techniques we invented in this thesis to detect behaviorally similar programs can improve the development of software engineering and security applications, such as code search and deobfuscation

Deep Learning Software Repositories

Bridging the abstraction gap between artifacts and concepts is the essence of software engineering (SE) research problems. SE researchers regularly use machine learning to bridge this gap, but there are three fundamental issues with traditional applications of machine learning in SE research. Traditional applications are too reliant on labeled data. They are too reliant on human intuition, and they are not capable of learning expressive yet efficient internal representations. Ultimately, SE research needs approaches that can automatically learn representations of massive, heterogeneous, datasets in situ, apply the learned features to a particular task and possibly transfer knowledge from task to task. Improvements in both computational power and the amount of memory in modern computer architectures have enabled new approaches to canonical machine learning tasks. Specifically, these architectural advances have enabled machines that are capable of learning deep, compositional representations of massive data depots. The rise of deep learning has ushered in tremendous advances in several fields. Given the complexity of software repositories, we presume deep learning has the potential to usher in new analytical frameworks and methodologies for SE research and the practical applications it reaches. This dissertation examines and enables deep learning algorithms in different SE contexts. We demonstrate that deep learners significantly outperform state-of-the-practice software language models at code suggestion on a Java corpus. Further, these deep learners for code suggestion automatically learn how to represent lexical elements. We use these representations to transmute source code into structures for detecting similar code fragments at different levels of granularity—without declaring features for how the source code is to be represented. Then we use our learning-based framework for encoding fragments to intelligently select and adapt statements in a codebase for automated program repair. In our work on code suggestion, code clone detection, and automated program repair, everything for representing lexical elements and code fragments is mined from the source code repository. Indeed, our work aims to move SE research from the art of feature engineering to the science of automated discovery

Checking smart contracts with structural code embedding

Ministry of Education, Singapore under its Academic Research Funding Tier

30 Years of Software Refactoring Research: A Systematic Literature Review

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/155872/4/30YRefactoring.pd