Sistemas interativos e distribuídos para telemedicina

doutoramento Ciências da ComputaçãoDurante as últimas décadas, as organizações de saúde têm vindo a adotar continuadamente as tecnologias de informação para melhorar o funcionamento dos seus serviços. Recentemente, em parte devido à crise financeira, algumas reformas no sector de saúde incentivaram o aparecimento de novas soluções de telemedicina para otimizar a utilização de recursos humanos e de equipamentos. Algumas tecnologias como a computação em nuvem, a computação móvel e os sistemas Web, têm sido importantes para o sucesso destas novas aplicações de telemedicina. As funcionalidades emergentes de computação distribuída facilitam a ligação de comunidades médicas, promovem serviços de telemedicina e a colaboração em tempo real. Também são evidentes algumas vantagens que os dispositivos móveis podem introduzir, tais como facilitar o trabalho remoto a qualquer hora e em qualquer lugar. Por outro lado, muitas funcionalidades que se tornaram comuns nas redes sociais, tais como a partilha de dados, a troca de mensagens, os fóruns de discussão e a videoconferência, têm o potencial para promover a colaboração no sector da saúde. Esta tese teve como objetivo principal investigar soluções computacionais mais ágeis que permitam promover a partilha de dados clínicos e facilitar a criação de fluxos de trabalho colaborativos em radiologia. Através da exploração das atuais tecnologias Web e de computação móvel, concebemos uma solução ubíqua para a visualização de imagens médicas e desenvolvemos um sistema colaborativo para a área de radiologia, baseado na tecnologia da computação em nuvem. Neste percurso, foram investigadas metodologias de mineração de texto, de representação semântica e de recuperação de informação baseada no conteúdo da imagem. Para garantir a privacidade dos pacientes e agilizar o processo de partilha de dados em ambientes colaborativos, propomos ainda uma metodologia que usa aprendizagem automática para anonimizar as imagens médicasDuring the last decades, healthcare organizations have been increasingly relying on information technologies to improve their services. At the same time, the optimization of resources, both professionals and equipment, have promoted the emergence of telemedicine solutions. Some technologies including cloud computing, mobile computing, web systems and distributed computing can be used to facilitate the creation of medical communities, and the promotion of telemedicine services and real-time collaboration. On the other hand, many features that have become commonplace in social networks, such as data sharing, message exchange, discussion forums, and a videoconference, have also the potential to foster collaboration in the health sector. The main objective of this research work was to investigate computational solutions that allow us to promote the sharing of clinical data and to facilitate the creation of collaborative workflows in radiology. By exploring computing and mobile computing technologies, we have designed a solution for medical imaging visualization, and developed a collaborative system for radiology, based on cloud computing technology. To extract more information from data, we investigated several methodologies such as text mining, semantic representation, content-based information retrieval. Finally, to ensure patient privacy and to streamline the data sharing in collaborative environments, we propose a machine learning methodology to anonymize medical images

Sofie: Smart Operating System For Internet Of Everything

The proliferation of Internet of Things and the success of rich cloud services have pushed the horizon of a new computing paradigm, Edge computing, which calls for processing the data at the edge of the network. Applications such as cloud offloading, smart home, and smart city are idea area for Edge computing to achieve better performance than cloud computing. Edge computing has the potential to address the concerns of response time requirement, battery life constraint, bandwidth cost saving, as well as data safety and privacy. However, there are still some challenges for applying Edge computing in our daily life. The missing of the specialized operating system for Edge computing is holding back the flourish of Edge computing applications. Service management, device management, component selection as well as data privacy and security is also not well supported yet in the current computing structure. To address the challenges for Edge computing systems and applications in these aspects, we have planned a series of empirical and theoretical research. We propose SOFIE: Smart Operating System For Internet Of Everything. SOFIE is the operating system specialized for Edge computing running on the Edge gateway. SOFIE could establish and maintain a reliable connection between cloud and Edge device to handle the data transportation between gateway and Edge devices; to provide service management and data management for Edge applications; to protect data privacy and security for Edge users; to guarantee the wellness of the Edge devices. Moreover, SOFIE also provide a naming mechanism to connect Edge device more efficiently. To solve the component selection problem in Edge computing paradigm, SOFIE also include our previous work, SURF, as a model to optimize the performance of the system. Finally, we deployed the design of SOFIE on an IoT/M2M system and support semantics with access control

Ami-deu : un cadre sémantique pour des applications adaptables dans des environnements intelligents

Cette thèse vise à étendre l’utilisation de l'Internet des objets (IdO) en facilitant le développement d’applications par des personnes non experts en développement logiciel. La thèse propose une nouvelle approche pour augmenter la sémantique des applications d’IdO et l’implication des experts du domaine dans le développement d’applications sensibles au contexte. Notre approche permet de gérer le contexte changeant de l’environnement et de générer des applications qui s’exécutent dans plusieurs environnements intelligents pour fournir des actions requises dans divers contextes. Notre approche est mise en œuvre dans un cadriciel (AmI-DEU) qui inclut les composants pour le développement d’applications IdO. AmI-DEU intègre les services d’environnement, favorise l’interaction de l’utilisateur et fournit les moyens de représenter le domaine d’application, le profil de l’utilisateur et les intentions de l’utilisateur. Le cadriciel permet la définition d’applications IoT avec une intention d’activité autodécrite qui contient les connaissances requises pour réaliser l’activité. Ensuite, le cadriciel génère Intention as a Context (IaaC), qui comprend une intention d’activité autodécrite avec des connaissances colligées à évaluer pour une meilleure adaptation dans des environnements intelligents. La sémantique de l’AmI-DEU est basée sur celle du ContextAA (Context-Aware Agents) – une plateforme pour fournir une connaissance du contexte dans plusieurs environnements. Le cadriciel effectue une compilation des connaissances par des règles et l'appariement sémantique pour produire des applications IdO autonomes capables de s’exécuter en ContextAA. AmI- DEU inclut également un outil de développement visuel pour le développement et le déploiement rapide d'applications sur ContextAA. L'interface graphique d’AmI-DEU adopte la métaphore du flux avec des aides visuelles pour simplifier le développement d'applications en permettant des définitions de règles étape par étape. Dans le cadre de l’expérimentation, AmI-DEU comprend un banc d’essai pour le développement d’applications IdO. Les résultats expérimentaux montrent une optimisation sémantique potentielle des ressources pour les applications IoT dynamiques dans les maisons intelligentes et les villes intelligentes. Notre approche favorise l'adoption de la technologie pour améliorer le bienêtre et la qualité de vie des personnes. Cette thèse se termine par des orientations de recherche que le cadriciel AmI-DEU dévoile pour réaliser des environnements intelligents omniprésents fournissant des adaptations appropriées pour soutenir les intentions des personnes.Abstract: This thesis aims at expanding the use of the Internet of Things (IoT) by facilitating the development of applications by people who are not experts in software development. The thesis proposes a new approach to augment IoT applications’ semantics and domain expert involvement in context-aware application development. Our approach enables us to manage the changing environment context and generate applications that run in multiple smart environments to provide required actions in diverse settings. Our approach is implemented in a framework (AmI-DEU) that includes the components for IoT application development. AmI- DEU integrates environment services, promotes end-user interaction, and provides the means to represent the application domain, end-user profile, and end-user intentions. The framework enables the definition of IoT applications with a self-described activity intention that contains the required knowledge to achieve the activity. Then, the framework generates Intention as a Context (IaaC), which includes a self-described activity intention with compiled knowledge to be assessed for augmented adaptations in smart environments. AmI-DEU framework semantics adopts ContextAA (Context-Aware Agents) – a platform to provide context-awareness in multiple environments. The framework performs a knowledge compilation by rules and semantic matching to produce autonomic IoT applications to run in ContextAA. AmI-DEU also includes a visual tool for quick application development and deployment to ContextAA. The AmI-DEU GUI adopts the flow metaphor with visual aids to simplify developing applications by allowing step-by-step rule definitions. As part of the experimentation, AmI-DEU includes a testbed for IoT application development. Experimental results show a potential semantic optimization for dynamic IoT applications in smart homes and smart cities. Our approach promotes technology adoption to improve people’s well-being and quality of life. This thesis concludes with research directions that the AmI-DEU framework uncovers to achieve pervasive smart environments providing suitable adaptations to support people’s intentions

Análise colaborativa de grandes conjuntos de séries temporais

The recent expansion of metrification on a daily basis has led to the production of massive quantities of data, and in many cases, these collected metrics are only useful for knowledge building when seen as a full sequence of data ordered by time, which constitutes a time series. To find and interpret meaningful behavioral patterns in time series, a multitude of analysis software tools have been developed. Many of the existing solutions use annotations to enable the curation of a knowledge base that is shared between a group of researchers over a network. However, these tools also lack appropriate mechanisms to handle a high number of concurrent requests and to properly store massive data sets and ontologies, as well as suitable representations for annotated data that are visually interpretable by humans and explorable by automated systems. The goal of the work presented in this dissertation is to iterate on existing time series analysis software and build a platform for the collaborative analysis of massive time series data sets, leveraging state-of-the-art technologies for querying, storing and displaying time series and annotations. A theoretical and domain-agnostic model was proposed to enable the implementation of a distributed, extensible, secure and high-performant architecture that handles various annotation proposals in simultaneous and avoids any data loss from overlapping contributions or unsanctioned changes. Analysts can share annotation projects with peers, restricting a set of collaborators to a smaller scope of analysis and to a limited catalog of annotation semantics. Annotations can express meaning not only over a segment of time, but also over a subset of the series that coexist in the same segment. A novel visual encoding for annotations is proposed, where annotations are rendered as arcs traced only over the affected series’ curves in order to reduce visual clutter. Moreover, the implementation of a full-stack prototype with a reactive web interface was described, directly following the proposed architectural and visualization model while applied to the HVAC domain. The performance of the prototype under different architectural approaches was benchmarked, and the interface was tested in its usability. Overall, the work described in this dissertation contributes with a more versatile, intuitive and scalable time series annotation platform that streamlines the knowledge-discovery workflow.A recente expansão de metrificação diária levou à produção de quantidades massivas de dados, e em muitos casos, estas métricas são úteis para a construção de conhecimento apenas quando vistas como uma sequência de dados ordenada por tempo, o que constitui uma série temporal. Para se encontrar padrões comportamentais significativos em séries temporais, uma grande variedade de software de análise foi desenvolvida. Muitas das soluções existentes utilizam anotações para permitir a curadoria de uma base de conhecimento que é compartilhada entre investigadores em rede. No entanto, estas ferramentas carecem de mecanismos apropriados para lidar com um elevado número de pedidos concorrentes e para armazenar conjuntos massivos de dados e ontologias, assim como também representações apropriadas para dados anotados que são visualmente interpretáveis por seres humanos e exploráveis por sistemas automatizados. O objetivo do trabalho apresentado nesta dissertação é iterar sobre o software de análise de séries temporais existente e construir uma plataforma para a análise colaborativa de grandes conjuntos de séries temporais, utilizando tecnologias estado-de-arte para pesquisar, armazenar e exibir séries temporais e anotações. Um modelo teórico e agnóstico quanto ao domínio foi proposto para permitir a implementação de uma arquitetura distribuída, extensível, segura e de alto desempenho que lida com várias propostas de anotação em simultâneo e evita quaisquer perdas de dados provenientes de contribuições sobrepostas ou alterações não-sancionadas. Os analistas podem compartilhar projetos de anotação com colegas, restringindo um conjunto de colaboradores a uma janela de análise mais pequena e a um catálogo limitado de semântica de anotação. As anotações podem exprimir significado não apenas sobre um intervalo de tempo, mas também sobre um subconjunto das séries que coexistem no mesmo intervalo. Uma nova codificação visual para anotações é proposta, onde as anotações são desenhadas como arcos traçados apenas sobre as curvas de séries afetadas de modo a reduzir o ruído visual. Para além disso, a implementação de um protótipo full-stack com uma interface reativa web foi descrita, seguindo diretamente o modelo de arquitetura e visualização proposto enquanto aplicado ao domínio AVAC. O desempenho do protótipo com diferentes decisões arquiteturais foi avaliado, e a interface foi testada quanto à sua usabilidade. Em geral, o trabalho descrito nesta dissertação contribui com uma abordagem mais versátil, intuitiva e escalável para uma plataforma de anotação sobre séries temporais que simplifica o fluxo de trabalho para a descoberta de conhecimento.Mestrado em Engenharia Informátic