Decision trees in epidemiological research

Background: In many studies, it is of interest to identify population subgroups that are relatively homogeneous with respect to an outcome. The nature of these subgroups can provide insight into effect mechanisms and suggest targets for tailored interventions. However, identifying relevant subgroups can be challenging with standard statistical methods. Main text: We review the literature on decision trees, a family of techniques for partitioning the population, on the basis of covariates, into distinct subgroups who share similar values of an outcome variable. We compare two decision tree methods, the popular Classification and Regression tree (CART) technique and the newer Conditional Inference tree (CTree) technique, assessing their performance in a simulation study and using data from the Box Lunch Study, a randomized controlled trial of a portion size intervention. Both CART and CTree identify homogeneous population subgroups and offer improved prediction accuracy relative to regression-based approaches when subgroups are truly present in the data. An important distinction between CART and CTree is that the latter uses a formal statistical hypothesis testing framework in building decision trees, which simplifies the process of identifying and interpreting the final tree model. We also introduce a novel way to visualize the subgroups defined by decision trees. Our novel graphical visualization provides a more scientifically meaningful characterization of the subgroups identified by decision trees. Conclusions: Decision trees are a useful tool for identifying homogeneous subgroups defined by combinations of individual characteristics. While all decision tree techniques generate subgroups, we advocate the use of the newer CTree technique due to its simplicity and ease of interpretation

Alternating model trees

Model tree induction is a popular method for tackling regression problems requiring interpretable models. Model trees are decision trees with multiple linear regression models at the leaf nodes. In this paper, we propose a method for growing alternating model trees, a form of option tree for regression problems. The motivation is that alternating decision trees achieve high accuracy in classification problems because they represent an ensemble classifier as a single tree structure. As in alternating decision trees for classifi-cation, our alternating model trees for regression contain splitter and prediction nodes, but we use simple linear regression functions as opposed to constant predictors at the prediction nodes. Moreover, additive regression using forward stagewise modeling is applied to grow the tree rather than a boosting algorithm. The size of the tree is determined using cross-validation. Our empirical results show that alternating model trees achieve significantly lower squared error than standard model trees on several regression datasets

On the usage of the probability integral transform to reduce the complexity of multi-way fuzzy decision trees in Big Data classification problems

We present a new distributed fuzzy partitioning method to reduce the complexity of multi-way fuzzy decision trees in Big Data classification problems. The proposed algorithm builds a fixed number of fuzzy sets for all variables and adjusts their shape and position to the real distribution of training data. A two-step process is applied : 1) transformation of the original distribution into a standard uniform distribution by means of the probability integral transform. Since the original distribution is generally unknown, the cumulative distribution function is approximated by computing the q-quantiles of the training set; 2) construction of a Ruspini strong fuzzy partition in the transformed attribute space using a fixed number of equally distributed triangular membership functions. Despite the aforementioned transformation, the definition of every fuzzy set in the original space can be recovered by applying the inverse cumulative distribution function (also known as quantile function). The experimental results reveal that the proposed methodology allows the state-of-the-art multi-way fuzzy decision tree (FMDT) induction algorithm to maintain classification accuracy with up to 6 million fewer leaves.Comment: Appeared in 2018 IEEE International Congress on Big Data (BigData Congress). arXiv admin note: text overlap with arXiv:1902.0935

On the automated extraction of regression knowledge from databases

The advent of inexpensive, powerful computing systems, together with the increasing amount of available data, conforms one of the greatest challenges for next-century information science. Since it is apparent that much future analysis will be done automatically, a good deal of attention has been paid recently to the implementation of ideas and/or the adaptation of systems originally developed in machine learning and other computer science areas. This interest seems to stem from both the suspicion that traditional techniques are not well-suited for large-scale automation and the success of new algorithmic concepts in difficult optimization problems. In this paper, I discuss a number of issues concerning the automated extraction of regression knowledge from databases. By regression knowledge is meant quantitative knowledge about the relationship between a vector of predictors or independent variables (x) and a scalar response or dependent variable (y). A number of difficulties found in some well-known tools are pointed out, and a flexible framework avoiding many such difficulties is described and advocated. Basic features of a new tool pursuing this direction are reviewed

Cost-Sensitive Decision Tree with Multiple Resource Constraints

Resource constraints are commonly found in classification tasks. For example, there could be a budget limit on implementation and a deadline for finishing the classification task. Applying the top-down approach for tree induction in this situation may have significant drawbacks. In particular, it is difficult, especially in an early stage of tree induction, to assess an attribute’s contribution to improving the total implementation cost and its impact on attribute selection in later stages because of the deadline constraint. To address this problem, we propose an innovative algorithm, namely, the Cost-Sensitive Associative Tree (CAT) algorithm. Essentially, the algorithm first extracts and retains association classification rules from the training data which satisfy resource constraints, and then uses the rules to construct the final decision tree. The approach has advantages over the traditional top-down approach, first because only feasible classification rules are considered in the tree induction and, second, because their costs and resource use are known. In contrast, in the top-down approach, the information is not available for selecting splitting attributes. The experiment results show that the CAT algorithm significantly outperforms the top-down approach and adapts very well to available resources.Cost-sensitive learning, mining methods and algorithms, decision trees

Simulating California reservoir operation using the classification and regression-tree algorithm combined with a shuffled cross-validation scheme

The controlled outflows from a reservoir or dam are highly dependent on the decisions made by the reservoir operators, instead of a natural hydrological process. Difference exists between the natural upstream inflows to reservoirs and the controlled outflows from reservoirs that supply the downstream users. With the decision maker's awareness of changing climate, reservoir management requires adaptable means to incorporate more information into decision making, such as water delivery requirement, environmental constraints, dry/wet conditions, etc. In this paper, a robust reservoir outflow simulation model is presented, which incorporates one of the well-developed data-mining models (Classification and Regression Tree) to predict the complicated human-controlled reservoir outflows and extract the reservoir operation patterns. A shuffled cross-validation approach is further implemented to improve CART's predictive performance. An application study of nine major reservoirs in California is carried out. Results produced by the enhanced CART, original CART, and random forest are compared with observation. The statistical measurements show that the enhanced CART and random forest overperform the CART control run in general, and the enhanced CART algorithm gives a better predictive performance over random forest in simulating the peak flows. The results also show that the proposed model is able to consistently and reasonably predict the expert release decisions. Experiments indicate that the release operation in the Oroville Lake is significantly dominated by SWP allocation amount and reservoirs with low elevation are more sensitive to inflow amount than others