3rd EGEE User Forum

We have organized this book in a sequence of chapters, each chapter associated with an application or technical theme introduced by an overview of the contents, and a summary of the main conclusions coming from the Forum for the chapter topic. The first chapter gathers all the plenary session keynote addresses, and following this there is a sequence of chapters covering the application flavoured sessions. These are followed by chapters with the flavour of Computer Science and Grid Technology. The final chapter covers the important number of practical demonstrations and posters exhibited at the Forum. Much of the work presented has a direct link to specific areas of Science, and so we have created a Science Index, presented below. In addition, at the end of this book, we provide a complete list of the institutes and countries involved in the User Forum

Project brief for IIUM Hospital (Phase 1), International Islamic University Malaysia (Medical Campus)Kuantan, Pahang Darul Makmur

A project brief on medical requirements for the planning and design of IIUM teaching hospital in IIUM Kuantan Campus. There are two versions of the brief, i.e. the 2009 version and the 2010 version. The march 2010 version was revised after the site visit was made to Kuantan by the bidders and as an outcome of the dialogue

Scenario-based system architecting : a systematic approach to developing future-proof system architectures

This thesis summarizes the research results of Mugurel T. Ionita, based on the work conducted in the context of the STW15 - AIMES16 project. The work presented in this thesis was conducted at Philips Research and coordinated by Eindhoven University of Technology. It resulted in six external available publications, and ten internal reports which are company confidential. The research regarded the methodology of developing system architectures, focusing in particular on two aspects of the early architecting phases. These were, first the generation of multiple architectural options, to consider the most likely changes to appear in the business environment, and second the quantitative assessment of these options with respect to how well they contribute to the overall quality attributes of the future system, including cost and risk analysis. The main reasons for looking at these two aspects of the architecting process was because architectures usually have to live for long periods of time, up to 5 years, which requires that they are able to deal successfully with the uncertainty associated with the future business environment. A second reason was because the quality attributes, the costs and the risks of a future system are usually dictated by its architecture, and therefore an early quantitative estimate about these attributes could prevent the system redesign. The research results of this project were two methods, namely a method for designing architecture options that are more future-proof, meaning more resilient to future changes, (SODA method), and within SODA a method for the quantitative assessment of the proposed architectural options (SQUASH method). The validation of the two methods has been performed in the area of professional systems, where they were applied in a concrete case study from the medical domain. The SODA method is an innovative solution to the problem of developing system architectures that are designed to survive the most likely changes to be foreseen in the future business environment of the system. The method enables on one hand the business stakeholders of a system to provide the architects with their knowledge and insight about the future when new systems are created. And on the other hand, the method enables the architects to take a long view and think strategically in terms of different plausible futures and unexpected surprises, when designing the high level structure of their systems. The SQUASH method is a systematic way of assessing in a quantitative manner, the proposed architectural options, with respect to how well they deal with quality aspects, costs and risks, before the architecture is actually implemented. The method enables the architects to reason about the most relevant attributes of the future system, and to make more informed decisions about their design, based on the quantitative data. Both methods, SODA and SQUASH, are descriptive in nature, rooted in the best industrial practices, and hence proposing better ways of developing system architectures

Telemedicine

Telemedicine is a rapidly evolving field as new technologies are implemented for example for the development of wireless sensors, quality data transmission. Using the Internet applications such as counseling, clinical consultation support and home care monitoring and management are more and more realized, which improves access to high level medical care in underserved areas. The 23 chapters of this book present manifold examples of telemedicine treating both theoretical and practical foundations and application scenarios

Political Advocacy on the Web: Issue Networks in Online Debate Over the USA Patriot Act

This dissertation examines how people and organizations used the World Wide Web to discuss and debate a public policy in 2005, at a point of time when the Internet was viewed as a maturing medium for communication. Combining descriptive and quantitative frame analyses with an issue network analysis, the study evaluated the frames apparent in discourse concerning two key sections of the USA Patriot Act, while the issue network analysis probed hypertext linkages among Web pages where discussion was occurring. Sections 214 and 215 of the USA Patriot Act provided a contentious national issue with multiple stakeholders presumed to be attempting to frame issues connected to the two sections. The focus on two sections allowed frame and issue network contrasts to be made. The study sought evidence of an Internet effect to determine whether the Web, through the way people were using it, was having a polarizing, synthesizing, or fragmentizing effect on discussion and debate. Frame overlap and hypertext linkage patterns among actors in the issue networks indicated an overall tendency toward synthesis. The study also probed the degree to which there is a joining, or symbiosis, of Web content and structure, in part evidenced by whether patterns exist that like-minded groups are coming together to form online community through hypertext linkages. Evidence was found to support this conclusion among Web pages in several Internet domains, although questions remain about linking patterns among blogs due to limitations of the software used in the study. Organizational Web sites on average used a similar number of frames compared to other Web page types, including blogs. The organizational Web pages were found to be briefer in how they discussed issues, however. The study contributes to theory by offering the first known empirical study of online community formation and issue advocacy on a matter of public policy and through its finding of a linkage between Web content and Web structure. Methodologically, the study presents a flexible mixed-methods model of descriptive and quantitative approaches that appears excellently suited for Internet studies. The dissertation’s use of fuzzy clustering and discriminant analysis offer important improvements over existing approaches in factor-based frame analysis and frame mapping techniques

Complexity Reduction in Image-Based Breast Cancer Care

The diversity of malignancies of the breast requires personalized diagnostic and therapeutic decision making in a complex situation. This thesis contributes in three clinical areas: (1) For clinical diagnostic image evaluation, computer-aided detection and diagnosis of mass and non-mass lesions in breast MRI is developed. 4D texture features characterize mass lesions. For non-mass lesions, a combined detection/characterisation method utilizes the bilateral symmetry of the breast s contrast agent uptake. (2) To improve clinical workflows, a breast MRI reading paradigm is proposed, exemplified by a breast MRI reading workstation prototype. Instead of mouse and keyboard, it is operated using multi-touch gestures. The concept is extended to mammography screening, introducing efficient navigation aids. (3) Contributions to finite element modeling of breast tissue deformations tackle two clinical problems: surgery planning and the prediction of the breast deformation in a MRI biopsy device

The impact of arterial input function determination variations on prostate dynamic contrast-enhanced magnetic resonance imaging pharmacokinetic modeling: a multicenter data analysis challenge, part II

This multicenter study evaluated the effect of variations in arterial input function (AIF) determination on pharmacokinetic (PK) analysis of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) data using the shutter-speed model (SSM). Data acquired from eleven prostate cancer patients were shared among nine centers. Each center used a site-specific method to measure the individual AIF from each data set and submitted the results to the managing center. These AIFs, their reference tissue-adjusted variants, and a literature population-averaged AIF, were used by the managing center to perform SSM PK analysis to estimate Ktrans (volume transfer rate constant), ve (extravascular, extracellular volume fraction), kep (efflux rate constant), and τi (mean intracellular water lifetime). All other variables, including the definition of the tumor region of interest and precontrast T1 values, were kept the same to evaluate parameter variations caused by variations in only the AIF. Considerable PK parameter variations were observed with within-subject coefficient of variation (wCV) values of 0.58, 0.27, 0.42, and 0.24 for Ktrans, ve, kep, and τi, respectively, using the unadjusted AIFs. Use of the reference tissue-adjusted AIFs reduced variations in Ktrans and ve (wCV = 0.50 and 0.10, respectively), but had smaller effects on kep and τi (wCV = 0.39 and 0.22, respectively). kep is less sensitive to AIF variation than Ktrans, suggesting it may be a more robust imaging biomarker of prostate microvasculature. With low sensitivity to AIF uncertainty, the SSM-unique τi parameter may have advantages over the conventional PK parameters in a longitudinal study