511 research outputs found

    Combining Optical Coherence Tomography with Fluorescence Imaging

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    Distortion and instability compensation with deep learning for rotational scanning endoscopic optical coherence tomography

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    Optical Coherence Tomography (OCT) is increasingly used in endoluminal procedures since it provides high-speed and high resolution imaging. Distortion and instability of images obtained with a proximal scanning endoscopic OCT system are significant due to the motor rotation irregularity, the friction between the rotating probe and outer sheath and synchronization issues. On-line compensation of artefacts is essential to ensure image quality suitable for real-time assistance during diagnosis or minimally invasive treatment. In this paper, we propose a new online correction method to tackle both B-scan distortion, video stream shaking and drift problem of endoscopic OCT linked to A-line level image shifting. The proposed computational approach for OCT scanning video correction integrates a Convolutional Neural Network (CNN) to improve the estimation of azimuthal shifting of each A-line. To suppress the accumulative error of integral estimation we also introduce another CNN branch to estimate a dynamic overall orientation angle. We train the network with semi-synthetic OCT videos by intentionally adding rotational distortion into real OCT scanning images. The results show that networks trained on this semi-synthetic data generalize to stabilize real OCT videos, and the algorithm efficacy is demonstrated on both ex vivo and in vivo data, where strong scanning artifacts are successfully corrected. (c) 2022 The Authors. Published by Elsevier B.V

    Advanced Endoscopic Navigation:Surgical Big Data,Methodology,and Applications

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    随着科学技术的飞速发展,健康与环境问题日益成为人类面临的最重大问题之一。信息科学、计算机技术、电子工程与生物医学工程等学科的综合应用交叉前沿课题,研究现代工程技术方法,探索肿瘤癌症等疾病早期诊断、治疗和康复手段。本论文综述了计算机辅助微创外科手术导航、多模态医疗大数据、方法论及其临床应用:从引入微创外科手术导航概念出发,介绍了医疗大数据的术前与术中多模态医学成像方法、阐述了先进微创外科手术导航的核心流程包括计算解剖模型、术中实时导航方案、三维可视化方法及交互式软件技术,归纳了各类微创外科手术方法的临床应用。同时,重点讨论了全球各种手术导航技术在临床应用中的优缺点,分析了目前手术导航领域内的最新技术方法。在此基础上,提出了微创外科手术方法正向数字化、个性化、精准化、诊疗一体化、机器人化以及高度智能化的发展趋势。【Abstract】Interventional endoscopy (e.g., bronchoscopy, colonoscopy, laparoscopy, cystoscopy) is a widely performed procedure that involves either diagnosis of suspicious lesions or guidance for minimally invasive surgery in a variety of organs within the body cavity. Endoscopy may also be used to guide the introduction of certain items (e.g., stents) into the body. Endoscopic navigation systems seek to integrate big data with multimodal information (e.g., computed tomography, magnetic resonance images, endoscopic video sequences, ultrasound images, external trackers) relative to the patient's anatomy, control the movement of medical endoscopes and surgical tools, and guide the surgeon's actions during endoscopic interventions. Nevertheless, it remains challenging to realize the next generation of context-aware navigated endoscopy. This review presents a broad survey of various aspects of endoscopic navigation, particularly with respect to the development of endoscopic navigation techniques. First, we investigate big data with multimodal information involved in endoscopic navigation. Next, we focus on numerous methodologies used for endoscopic navigation. We then review different endoscopic procedures in clinical applications. Finally, we discuss novel techniques and promising directions for the development of endoscopic navigation.X.L. acknowledges funding from the Fundamental Research Funds for the Central Universities. T.M.P. acknowledges funding from the Canadian Foundation for Innovation, the Canadian Institutes for Health Research, the National Sciences and Engineering Research Council of Canada, and a grant from Intuitive Surgical Inc

    Automated quantification and classification of human kidney microstructures obtained by optical coherence tomography

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    Optical coherence tomography (OCT) is a rapidly emerging imaging modality that can non-invasively provide cross-sectional, high-resolution images of tissue morphology such as kidney in situ and in real-time. Because the viability of a donor kidney is closely correlated with its tubular morphology, and a large amount of image datasets are expected when using OCT to scan the entire kidney, it is necessary to develop automated image analysis methods to quantify the spatially-resolved morphometric parameters such as tubular diameter, and to classify various microstructures. In this study, we imaged the human kidney in vitro, quantified the diameters of hollow structures such as blood vessels and uriniferous tubules, and classified those structures automatically. The quantification accuracy was validated. This work can enable studies to determine the clinical utility of OCT for kidney imaging, as well as studies to evaluate kidney morphology as a biomarker for assessing kidney's viability prior to transplantation

    Optical coherence tomography for biomedical imaging

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    Two projects are presented in this thesis; 1) a hollow core, concentrically symmetric beam splitting Michelson interferometric probe for optical coherence tomography and 2) the imaging of bioactive ceramic scaffolds using swept source optical coherence tomography. The key component of the interferometer is a compact, small diameter probe composed of a collimating lens, hollow core beam splitting tube, and a focusing lens intended to be used for endoscopic imaging. The beam splitting tube was created by sputter coating the distal endface of a finely polished thick wall capillary tube with a highly reflective gold layer. Part of the light travels through the wall of the tube is reflected by the distal endface, forming a reference arm, and part passes through the hollow core to be backscattered by the sample material, forming a sample arm. To demonstrate the functionality of the probe, cross-sectional and volumetric images of a simple sample were obtained. An additional advantage of this probe is an easily adjustable working distance. Bioactive ceramic scaffolds have been shown to possess high degrees of conversion to hydroyapatite and are currently used in a variety of biomedical applications. In an effort to enhance current research and demonstrate the feasibility of optical coherence tomography as a bioceramic imaging modality, a swept source optical coherence tomography system was employed in the imaging of a variety of ceramic bioscaffolds. In order to demonstrate the imaging capabilities of an optical coherence tomography system for imaging of ceramic bioscaffolds, images of scaffolds were compared to other imaging modalities --Abstract, page iii

    Optical tecnology developments in biomedicine: history, current and future

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    Biomedical optics is a rapidly emerging field for medical imaging and diagnostics. This paper reviews several biomedical optical technologies that have been developed and translated for either clinical or pre-clinical applications. Specifically, we focus on the following technologies: 1) near-infrared spectroscopy and tomography, 2) optical coherence tomography, 3) fluorescence spectroscopy and imaging, and 4) optical molecular imaging. There representative biomedical applications are also discussed here

    NOVEL TECHNOLOGIES AND APPLICATIONS FOR FLUORESCENT LAMINAR OPTICAL TOMOGRAPHY

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    Laminar optical tomography (LOT) is a mesoscopic three-dimensional (3D) optical imaging technique that can achieve both a resolution of 100-200 µm and a penetration depth of 2-3 mm based either on absorption or fluorescence contrast. Fluorescence laminar optical tomography (FLOT) can also provide large field-of-view (FOV) and high acquisition speed. All of these advantages make FLOT suitable for 3D depth-resolved imaging in tissue engineering, neuroscience, and oncology. In this study, by incorporating the high-dynamic-range (HDR) method widely used in digital cameras, we presented the HDR-FLOT. HDR-FLOT can moderate the limited dynamic range of the charge-coupled device-based system in FLOT and thus increase penetration depth and improve the ability to image fluorescent samples with a large concentration difference. For functional mapping of brain activities, we applied FLOT to record 3D neural activities evoked in the whisker system of mice by deflection of a single whisker in vivo. We utilized FLOT to investigate the cell viability, migration, and bone mineralization within bone tissue engineering scaffolds in situ, which allows depth-resolved molecular characterization of engineered tissues in 3D. Moreover, we investigated the feasibility of the multi-modal optical imaging approach including high-resolution optical coherence tomography (OCT) and high-sensitivity FLOT for structural and molecular imaging of colon tumors, which has demonstrated more accurate diagnosis with 88.23% (82.35%) for sensitivity (specificity) compared to either modality alone. We further applied the multi-modal imaging system to monitor the drug distribution and therapeutic effects during and after Photo-immunotherapy (PIT) in situ and in vivo, which is a novel low-side-effect targeted cancer therapy. A minimally-invasive two-channel fluorescence fiber bundle imaging system and a two-photon microscopy system combined with a micro-prism were also developed to verify the results

    HIGH-SPEED ENDOSCOPIC OPTICAL COHERENCE TOMOGRAPHY AND ITS APPLICATIONS

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    Optical coherence tomography (OCT) is a real-time high-resolution imaging technology providing cross-sectional images of biological structures at a resolution of <1 to 20 µm and a penetration depth of 1 to 3 mm in most highly scattering tissues. OCT is in general non-invasive and can perform real-time ‘optical biopsy’ with a resolution approaching standard low magnification histopathology but without tissue removal. Conventional OCT requires a bulky imaging probe, which limits most of the in vivo applications to ophthalmology and dermatology. The development of miniature OCT imaging probe has greatly expanded the scope of the applications (e.g., cardiology, gastroenterology, etc.). Recent technical advances in OCT has extended the imaging speed from a few kHz to a few hundreds kHz, enabling in vivo three-dimensional (3D) imaging. This dissertation describes the development of a high-speed endoscopic OCT imaging system. The system employs the Fourier domain mode locking laser technology at a wavelength range of 1300 nm to reach an axial resolution of 9.7 µm and an A-scan rate of 220 kHz. A Mach-Zehnder interferometer setup is used to achieve shot-noise limited detection. A generic OCT software platform is developed for data acquisition, processing, display, storage, and 3D visualization. Miniature OCT imaging probes are designed and fabricated for in vivo 3D OCT imaging. The utility of the high-speed endoscopic OCT system is demonstrated for clinical and basic researches in pulmonology and gastroenterology. In addition, an ultrahigh-resolution endoscopic OCT system is developed at a wavelength range of 800 nm to reach an axial resolution of 3.0 µm and an A-scan rate of up to 20 kHz. Furthermore, a novel type of OCT contrast agents, scattering dominant gold nanocages, is developed with the aid of a cross-reference OCT imaging method. Finally, a multimodal endoscopic imaging system combines 1300 nm en face OCT and 1550 nm two photon fluorescence is developed. Compared with most of other imaging modalities, high-speed endoscopic OCT has unmatched advantages including high spatial resolution, imaging speed, and non-invasiveness / minimal invasiveness. The results in this dissertation suggest that high-speed endoscopic OCT may has a great impact on healthcare as well as basic research
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