Aspects of k-k-Routing in Meshes and OTIS Networks

Aspects of k-k Routing in Meshes and OTIS-Networks Abstract Efficient data transport in parallel computers build on sparse interconnection networks is crucial for their performance. A basic transport problem in such a computer is the k-k routing problem. In this thesis, aspects of the k-k routing problem on r-dimensional meshes and OTIS-G networks are discussed. The first oblivious routing algorithms for these networks are presented that solve the k-k routing problem in an asymptotically optimal running time and a constant buffer size. Furthermore, other aspects of the k-k routing problem for OTIS-G networks are analysed. In particular, lower bounds for the problem based on the diameter and bisection width of OTIS-G networks are given, and the k-k sorting problem on the OTIS-Mesh is considered. Based on OTIS-G networks, a new class of networks, called Extended OTIS-G networks, is introduced, which have smaller diameters than OTIS-G networks.Für die Leistungfähigkeit von Parallelrechnern, die über ein Verbindungsnetzwerk kommunizieren, ist ein effizienter Datentransport entscheidend. Ein grundlegendes Transportproblem in einem solchen Rechner ist das k-k Routing Problem. In dieser Arbeit werden Aspekte dieses Problems in r-dimensionalen Gittern und OTIS-G Netzwerken untersucht. Es wird der erste vergessliche (oblivious) Routing Algorithmus vorgestellt, der das k-k Routing Problem in diesen Netzwerken in einer asymptotisch optimalen Laufzeit bei konstanter Puffergröße löst. Für OTIS-G Netzwerke werden untere Laufzeitschranken für das untersuchte Problem angegeben, die auf dem Durchmesser und der Bisektionsweite der Netzwerke basieren. Weiterhin wird ein Algorithmus vorgestellt, der das k-k Sorting Problem mit einer Laufzeit löst, die nahe an der Bisektions- und Durchmesserschranke liegt. Basierend auf den OTIS-G Netzwerken, wird eine neue Klasse von Netzwerken eingeführt, die sogenannten Extended OTIS-G Netzwerke, die sich durch einen kleineren Durchmesser von OTIS-G Netzwerken unterscheiden

The k-ary n-direct s-indirect family of topologies for large-scale interconnection networks

The final publication is available at Springer via http://dx.doi.org/10.1007/s11227-016-1640-zIn large-scale supercomputers, the interconnection network plays a key role in system performance. Network topology highly defines the performance and cost of the interconnection network. Direct topologies are sometimes used due to its reduced hardware cost, but the number of network dimensions is limited by the physical 3D space, which leads to an increase of the communication latency and a reduction of network throughput for large machines. Indirect topologies can provide better performance for large machines, but at higher hardware cost. In this paper, we propose a new family of hybrid topologies, the k-ary n-direct s-indirect, that combines the best features from both direct and indirect topologies to efficiently connect an extremely high number of processing nodes. The proposed network is an n-dimensional topology where the k nodes of each dimension are connected through a small indirect topology of s stages. This combination results in a family of topologies that provides high performance, with latency and throughput figures of merit close to indirect topologies, but at a lower hardware cost. In particular, it doubles the throughput obtained per cost unit compared with indirect topologies in most of the cases. Moreover, their fault-tolerance degree is similar to the one achieved by direct topologies built with switches with the same number of ports.This work was supported by the Spanish Ministerio de Economa y Competitividad (MINECO) and by FEDER funds under Grant TIN2012-38341-C04-01 and by Programa de Ayudas de Investigacion y Desarrollo (PAID) from Universitat Politecnica de Valencia.Peñaranda Cebrián, R.; Gómez Requena, C.; Gómez Requena, ME.; López Rodríguez, PJ.; Duato Marín, JF. (2016). 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Optimal Permutation Routing for Low-dimensional Hypercubes

We consider the offline problem of routing a permutation of tokens on the nodes of a d-dimensional hypercube, under a queueless MIMD communication model (under the constraints that each hypercube edge may only communicate one token per communication step, and each node may only be occupied by a single token between communication steps). For a d-dimensional hypercube, it is easy to see that d communication steps are necessary. We develop a theory of “separability ” which enables an analytical proof that d steps suffice for the case d = 3, and facilitates an experimental verification that d steps suffice for d = 4. This result improves the upper bound for the number of communication steps required to route an arbitrary permutation on arbitrarily large hypercubes to 2d − 4. We also find an interesting side-result, that the number of possible communication steps in a d-dimensional hypercube is the same as the number of perfect matchings in a (d + 1)-dimensional hypercube, a combinatorial quantity for which there is no closed-form expression. Finally we present some experimental observations which may lead to a proof of a more general result for arbitrarily large dimension d. 2

Mapping applications onto FPGA-centric clusters

High Performance Computing (HPC) is becoming increasingly important throughout science and engineering as ever more complex problems must be solved through computational simulations. In these large computational applications, the latency of communication between processing nodes is often the key factor that limits performance. An emerging alternative computer architecture that addresses the latency problem is the FPGA-centric cluster (FCC); in these systems, the devices (FPGAs) are directly interconnected and thus many layers of hardware and software are avoided. The result can be scalability not currently achievable with other technologies. In FCCs, FPGAs serve multiple functions: accelerator, network interface card (NIC), and router. Moreover, because FPGAs are configurable, there is substantial opportunity to tailor the router hardware to the application; previous work has demonstrated that such application-aware configuration can effect a substantial improvement in hardware efficiency. One constraint of FCCs is that it is convenient for their interconnect to be static, direct, and have a two or three dimensional mesh topology. Thus, applications that are naturally of a different dimensionality (have a different logical topology) from that of the FCC must be remapped to obtain optimal performance. In this thesis we study various aspects of the mapping problem for FCCs. There are two major research thrusts. The first is finding the optimal mapping of logical to physical topology. This problem has received substantial attention by both the theory community, where topology mapping is referred to as graph embedding, and by the High Performance Computing (HPC) community, where it is a question of process placement. We explore the implications of the different mapping strategies on communication behavior in FCCs, especially on resulting load imbalance. The second major research thrust is built around the hypothesis that applications that need to be remapped (due to differing logical and physical topologies) will have different optimal router configurations from those applications that do not. For example, due to remapping, some virtual or physical communication links may have little occupancy; therefore fewer resources should be allocated to them. Critical here is the creation of a new set of parameterized hardware features that can be configured to best handle load imbalances caused by remapping. These two thrusts form a codesign loop: certain mapping algorithms may be differentially optimal due to application-aware router reconfiguration that accounts for this mapping. This thesis has four parts. The first part introduces the background and previous work related to communication in general and, in particular, how it is implemented in FCCs. We build on previous work on application-aware router configuration. The second part introduces topology mapping mechanisms including those derived from graph embeddings and a greedy algorithm commonly used in HPC. In the third part, topology mappings are evaluated for performance and imbalance; we note that different mapping strategies lead to different imbalances both in the overall network and in each node. The final part introduces reconfigure router design that allocates resources based on different imbalance situations caused by different mapping behaviors

Automating Topology Aware Mapping for Supercomputers

Petascale machines with hundreds of thousands of cores are being built. These machines have varying interconnect topologies and large network diameters. Computation is cheap and communication on the network is becoming the bottleneck for scaling of parallel applications. Network contention, specifically, is becoming an increasingly important factor affecting overall performance. The broad goal of this dissertation is performance optimization of parallel applications through reduction of network contention. Most parallel applications have a certain communication topology. Mapping of tasks in a parallel application based on their communication graph, to the physical processors on a machine can potentially lead to performance improvements. Mapping of the communication graph for an application on to the interconnect topology of a machine while trying to localize communication is the research problem under consideration. The farther different messages travel on the network, greater is the chance of resource sharing between messages. This can create contention on the network for networks commonly used today. Evaluative studies in this dissertation show that on IBM Blue Gene and Cray XT machines, message latencies can be severely affected under contention. Realizing this fact, application developers have started paying attention to the mapping of tasks to physical processors to minimize contention. Placement of communicating tasks on nearby physical processors can minimize the distance traveled by messages and reduce the chances of contention. Performance improvements through topology aware placement for applications such as NAMD and OpenAtom are used to motivate this work. Building on these ideas, the dissertation proposes algorithms and techniques for automatic mapping of parallel applications to relieve the application developers of this burden. The effect of contention on message latencies is studied in depth to guide the design of mapping algorithms. The hop-bytes metric is proposed for the evaluation of mapping algorithms as a better metric than the previously used maximum dilation metric. The main focus of this dissertation is on developing topology aware mapping algorithms for parallel applications with regular and irregular communication patterns. The automatic mapping framework is a suite of such algorithms with capabilities to choose the best mapping for a problem with a given communication graph. The dissertation also briefly discusses completely distributed mapping techniques which will be imperative for machines of the future.published or submitted for publicationnot peer reviewe

Simulation Of Multi-core Systems And Interconnections And Evaluation Of Fat-Mesh Networks

Simulators are very important in computer architecture research as they enable the exploration of new architectures to obtain detailed performance evaluation without building costly physical hardware. Simulation is even more critical to study future many-core architectures as it provides the opportunity to assess currently non-existing computer systems. In this thesis, a multiprocessor simulator is presented based on a cycle accurate architecture simulator called SESC. The shared L2 cache system is extended into a distributed shared cache (DSC) with a directory-based cache coherency protocol. A mesh network module is extended and integrated into SESC to replace the bus for scalable inter-processor communication. While these efforts complete an extended multiprocessor simulation infrastructure, two interconnection enhancements are proposed and evaluated. A novel non-uniform fat-mesh network structure similar to the idea of fat-tree is proposed. This non-uniform mesh network takes advantage of the average traffic pattern, typically all-to-all in DSC, to dedicate additional links for connections with heavy traffic (e.g., near the center) and fewer links for lighter traffic (e.g., near the periphery). Two fat-mesh schemes are implemented based on different routing algorithms. Analytical fat-mesh models are constructed by presenting the expressions for the traffic requirements of personalized all-to-all traffic. Performance improvements over the uniform mesh are demonstrated in the results from the simulator. A hybrid network consisting of one packet switching plane and multiple circuit switching planes is constructed as the second enhancement. The circuit switching planes provide fast paths between neighbors with heavy communication traffic. A compiler technique that abstracts the symbolic expressions of benchmarks' communication patterns can be used to help facilitate the circuit establishment

Cost Effective Routing Implementations for On-chip Networks

Arquitecturas de múltiples núcleos como multiprocesadores (CMP) y soluciones multiprocesador para sistemas dentro del chip (MPSoCs) actuales se basan en la eficacia de las redes dentro del chip (NoC) para la comunicación entre los diversos núcleos. Un diseño eficiente de red dentro del chip debe ser escalable y al mismo tiempo obtener valores ajustados de área, latencia y consumo de energía. Para diseños de red dentro del chip de propósito general se suele usar topologías de malla 2D ya que se ajustan a la distribución del chip. Sin embargo, la aparición de nuevos retos debe ser abordada por los diseñadores. Una mayor probabilidad de defectos de fabricación, la necesidad de un uso optimizado de los recursos para aumentar el paralelismo a nivel de aplicación o la necesidad de técnicas eficaces de ahorro de energía, puede ocasionar patrones de irregularidad en las topologías. Además, el soporte para comunicación colectiva es una característica buscada para abordar con eficacia las necesidades de comunicación de los protocolos de coherencia de caché. En estas condiciones, un encaminamiento eficiente de los mensajes se convierte en un reto a superar. El objetivo de esta tesis es establecer las bases de una nueva arquitectura para encaminamiento distribuido basado en lógica que es capaz de adaptarse a cualquier topología irregular derivada de una estructura de malla 2D, proporcionando así una cobertura total para cualquier caso resultado de soportar los retos mencionados anteriormente. Para conseguirlo, en primer lugar, se parte desde una base, para luego analizar una evolución de varios mecanismos, y finalmente llegar a una implementación, que abarca varios módulos para alcanzar el objetivo mencionado anteriormente. De hecho, esta última implementación tiene por nombre eLBDR (effective Logic-Based Distributed Routing). Este trabajo cubre desde el primer mecanismo, LBDR, hasta el resto de mecanismos que han surgido progresivamente.Rodrigo Mocholí, S. (2010). Cost Effective Routing Implementations for On-chip Networks [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/8962Palanci

Admission control and routing : theory and practice

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 1995.Includes bibliographical references (leaves 183-190).by Rainer Gawlick.Ph.D

Predictive and distributed routing balancing (PR-DRB) : high speed interconnection networks

Current parallel applications running on clusters require the use of an interconnection network to perform communications among all computing nodes available. Imbalance of communications can produce network congestion, reducing throughput and increasing latency, degrading the overall system performance. On the other hand, parallel applications running on these networks posses representative stages which allow their characterization, as well as repetitive behavior that can be identified on the basis of this characterization. This work presents the Predictive and Distributed Routing Balancing (PR-DRB), a new method developed to gradually control network congestion, based on paths expansion, traffic distribution and effective traffic load, in order to maintain low latency values. PR-DRB monitors messages latencies on intermediate routers, makes decisions about alternative paths and record communication pattern information encountered during congestion situation. Based on the concept of applications repetitiveness, best solution recorded are reapplied when saved communication pattern re-appears. Traffic congestion experiments were conducted in order to evaluate the performance of the method, and improvements were observed.Les aplicacions paral·leles actuals en els Clústers requereixen l'ús d'una xarxa d'interconnexió per comunicar a tots els nodes de còmput disponibles. El desequilibri en la càrrega de comunicacions pot congestionar la xarxa, incrementant la latència i disminuint el throughput, degradant el rendiment total del sistema. D'altra banda, les aplicacions paral·leles que s'executen sobre aquestes xarxes contenen etapes representatives durant la seva execució les quals permeten caracteritzar-les, a més d'extraure un comportament repetitiu que pot ser identificat en base a aquesta caracterització. Aquest treball presenta el Balanceig Predictiu de Encaminament Distribuït (PR-DRB), un nou mètode desenvolupat per controlar la congestió a la xarxa en forma gradual, basat en l'expansió de camins, la distribució de trànsit i càrrega efectiva actual per tal de mantenir una latència baixa. PR-DRB monitoritza la latència dels missatges en els encaminadors, pren decisions sobre els camins alternatius a utilitzar i registra la informació de la congestió sobre la base del patró de comunicacions detectat, utilitzant com a concepte base la repetitivitat de les aplicacions per després tornar a aplicar la millor solució quan aquest patró es repeteixi. Experiments de trànsit amb congestió van ser portats a terme per avaluar el rendiment del mètode, els quals van mostrar la bondat del mateix.Las aplicaciones paralelas actuales en los Clústeres requieren el uso de una red de interconexión para comunicar a todos los nodos de cómputo disponibles. El desbalance en la carga de comunicaciones puede congestionar la red, incrementando la latencia y disminuyendo el throughput, degradando el rendimiento total del sistema. Por otro lado, las aplicaciones paralelas que corren sobre estas redes contienen etapas representativas durante su ejecución las cuales permiten caracterizarlas, además de un comportamiento repetitivo que puede ser identificado en base a dicha caracterización. Este trabajo presenta el Balanceo Predictivo de Encaminamiento Distribuido (PR-DRB), un nuevo método desarrollado para controlar la congestión en la red en forma gradual; basado en la expansión de caminos, la distribución de tráfico y carga efectiva actual, a fin de mantener una latencia baja. PR-DRB monitorea la latencia de los mensajes en los encaminadores, toma decisiones sobre los caminos alternativos a utilizar y registra la información de la congestión en base al patrón de comunicaciones detectado, usando como concepto base la repetitividad de las aplicaciones para luego volver a aplicar la mejor solución cuando dicho patrón se repita. Experimentos de tráfico con congestión fueron llevados a cabo para evaluar el rendimiento del método, los cuales mostraron la bondad del mismo