Distributed-Memory Breadth-First Search on Massive Graphs

This chapter studies the problem of traversing large graphs using the breadth-first search order on distributed-memory supercomputers. We consider both the traditional level-synchronous top-down algorithm as well as the recently discovered direction optimizing algorithm. We analyze the performance and scalability trade-offs in using different local data structures such as CSR and DCSC, enabling in-node multithreading, and graph decompositions such as 1D and 2D decomposition.Comment: arXiv admin note: text overlap with arXiv:1104.451

Automatic generation of synthetic workloads for multicore systems

textWhen designing a computer system, benchmark programs are used with cycle accurate performance/power simulators and HDL level simulators to evaluate novel architectural enhancements, perform design space exploration, understand the worst-case power characteristics of various designs and find performance bottlenecks. This research effort is directed towards automatically generating synthetic benchmarks to tackle three design challenges: 1) For most of the simulation related purposes, full runs of modern real world parallel applications like the PARSEC, SPLASH suites cannot be used as they take machine weeks of time on cycle accurate and HDL level simulators incurring a prohibitively large time cost 2) The second design challenge is that, some of these real world applications are intellectual property and cannot be shared with processor vendors for design studies 3) The most significant problem in the design stage is the complexity involved in fixing the maximum power consumption of a multicore design, called the Thermal Design Power (TDP). In an effort towards fixing this maximum power consumption of a system at the most optimal point, designers are used to hand-crafting possible code snippets called power viruses. But, this process of trying to manually write such maximum power consuming code snippets is very tedious. All of these aforementioned challenges has lead to the resurrection of synthetic benchmarks in the recent past, serving as a promising solution to all the challenges. During the design stage of a multicore system, availability of a framework to automatically generate system-level synthetic benchmarks for multicore systems will greatly simplify the design process and result in more confident design decisions. The key idea behind such an adaptable benchmark synthesis framework is to identify the key characteristics of real world parallel applications that affect the performance and power consumption of a real program and create synthetic executable programs by varying the values for these characteristics. Firstly, with such a framework, one can generate miniaturized synthetic clones for large target (current and futuristic) parallel applications enabling an architect to use them with slow low-level simulation models (e.g., RTL models in VHDL/Verilog) and helps in tailoring designs to the targeted applications. These synthetic benchmark clones can be distributed to architects and designers even if the original applications are intellectual property, when they are not publicly available. Lastly, such a framework can be used to automatically create maximum power consuming code snippets to be able to help in fixing the TDP, heat sinks, cooling system and other power related features of the system. The workload cloning framework built using the proposed synthetic benchmark generation methodology is evaluated to show its superiority over the existing cloning methodologies for single-core systems by generating miniaturized clones for CPU2006 and ImplantBench workloads with only an average error of 2.9% in performance for up to five orders of magnitude of simulation speedup. The correlation coefficient predicting the sensitivity to design changes is 0.95 and 0.98 for performance and power consumption. The proposed framework is evaluated by cloning parallel applications implemented based on p-threads and OpenMP in the PARSEC benchmark suite. The average error in predicting performance is 4.87% and that of power consumption is 2.73%. The correlation coefficient predicting the sensitivity to design changes is 0.92 for performance. The efficacy of the proposed synthetic benchmark generation framework for power virus generation is evaluation on SPARC, Alpha and x86 ISAs using full system simulators and also using real hardware. The results show that the power viruses generated for single-core systems consume 14-41% more power compared to MPrime on SPARC ISA. Similarly, the power viruses generated for multicore systems consume 45-98%, 40-89% and 41-56% more power than PARSEC workloads, running multiple copies of MPrime and multithreaded SPECjbb respectively.Electrical and Computer Engineerin

On the design of architecture-aware algorithms for emerging applications

This dissertation maps various kernels and applications to a spectrum of programming models and architectures and also presents architecture-aware algorithms for different systems. The kernels and applications discussed in this dissertation have widely varying computational characteristics. For example, we consider both dense numerical computations and sparse graph algorithms. This dissertation also covers emerging applications from image processing, complex network analysis, and computational biology. We map these problems to diverse multicore processors and manycore accelerators. We also use new programming models (such as Transactional Memory, MapReduce, and Intel TBB) to address the performance and productivity challenges in the problems. Our experiences highlight the importance of mapping applications to appropriate programming models and architectures. We also find several limitations of current system software and architectures and directions to improve those. The discussion focuses on system software and architectural support for nested irregular parallelism, Transactional Memory, and hybrid data transfer mechanisms. We believe that the complexity of parallel programming can be significantly reduced via collaborative efforts among researchers and practitioners from different domains. This dissertation participates in the efforts by providing benchmarks and suggestions to improve system software and architectures.Ph.D.Committee Chair: Bader, David; Committee Member: Hong, Bo; Committee Member: Riley, George; Committee Member: Vuduc, Richard; Committee Member: Wills, Scot

Sharing the instruction cache among lean cores on an asymmetric CMP for HPC applications

High performance computing (HPC) applications have parallel code sections that must scale to large numbers of cores, which makes them sensitive to serial regions. Current supercomputing systems with heterogeneous or asymmetric CMPs (ACMP) combine few high-performance big cores for serial regions, together with many low-power lean cores for throughput computing. The low requirements of HPC applications in the core front-end lead some designs, such as SMT and GPU cores, to share front-end structures including the instruction cache (I-cache). However, little work exists to analyze the benefit of sharing the I-cache among full cores, which seems compelling as a solution to reduce silicon area and power. This paper analyzes the performance, power and area impact of such a design on an ACMP with one high-performance core and multiple low-power cores. Having identified that multiple cores run the same code during parallel regions, the lean cores share the I-cache with the intent of benefiting from mutual prefetching, without increasing the average access latency. Our exploration of the multiple parameters finds the sweet spot on a wide interconnect to access the shared I-cache and the inclusion of a few line buffers to provide the required bandwidth and latency to sustain performance. The projections with McPAT and a rich set of HPC benchmarks show 11% area savings with a 5% energy reduction at no performance cost.The research was supported by European Unions 7th Framework Programme [FP7/2007-2013] under project Mont-Blanc (288777), the Ministry of Economy and Competitiveness of Spain (TIN2012-34557, TIN2015-65316-P, and BES-2013-063925), Generalitat de Catalunya (2014-SGR-1051 and 2014-SGR-1272), HiPEAC-3 Network of Excellence (ICT-287759), and finally the Severo Ochoa Program (SEV-2011-00067) of the Spanish Government.Peer ReviewedPostprint (author's final draft

On the conditions for efficient interoperability with threads: An experience with PGAS languages using Cray communication domains

Today's high performance systems are typically built from shared memory nodes connected by a high speed network. That architecture, combined with the trend towards less memory per core, encourages programmers to use a mixture of message passing and multithreaded programming. Unfortunately, the advantages of using threads for in-node programming are hindered by their inability to efficiently communicate between nodes. In this work, we identify some of the performance problems that arise in such hybrid programming environments and characterize conditions needed to achieve high communication performance for multiple threads: addressability of targets, separability of communication paths, and full direct reachability to targets. Using the GASNet communication layer on the Cray XC30 as our experimental platform, we show how to satisfy these conditions. We also discuss how satisfying these conditions is influenced by the communication abstraction, implementation constraints, and the interconnect messaging capabilities. To evaluate these ideas, we compare the communication performance of a thread-based node runtime to a process-based runtime. Without our GASNet extensions, thread communication is significantly slower than processes - up to 21x slower. Once the implementation is modified to address each of our conditions, the two runtimes have comparable communication performance. This allows programmers to more easily mix models like OpenMP, CILK, or pthreads with a GASNet-based model like UPC, with the associated performance, convenience and interoperability advantages that come from using threads within a node. © 2014 ACM

GPUs as Storage System Accelerators

Massively multicore processors, such as Graphics Processing Units (GPUs), provide, at a comparable price, a one order of magnitude higher peak performance than traditional CPUs. This drop in the cost of computation, as any order-of-magnitude drop in the cost per unit of performance for a class of system components, triggers the opportunity to redesign systems and to explore new ways to engineer them to recalibrate the cost-to-performance relation. This project explores the feasibility of harnessing GPUs' computational power to improve the performance, reliability, or security of distributed storage systems. In this context, we present the design of a storage system prototype that uses GPU offloading to accelerate a number of computationally intensive primitives based on hashing, and introduce techniques to efficiently leverage the processing power of GPUs. We evaluate the performance of this prototype under two configurations: as a content addressable storage system that facilitates online similarity detection between successive versions of the same file and as a traditional system that uses hashing to preserve data integrity. Further, we evaluate the impact of offloading to the GPU on competing applications' performance. Our results show that this technique can bring tangible performance gains without negatively impacting the performance of concurrently running applications.Comment: IEEE Transactions on Parallel and Distributed Systems, 201

Speculative Segmented Sum for Sparse Matrix-Vector Multiplication on Heterogeneous Processors

Sparse matrix-vector multiplication (SpMV) is a central building block for scientific software and graph applications. Recently, heterogeneous processors composed of different types of cores attracted much attention because of their flexible core configuration and high energy efficiency. In this paper, we propose a compressed sparse row (CSR) format based SpMV algorithm utilizing both types of cores in a CPU-GPU heterogeneous processor. We first speculatively execute segmented sum operations on the GPU part of a heterogeneous processor and generate a possibly incorrect results. Then the CPU part of the same chip is triggered to re-arrange the predicted partial sums for a correct resulting vector. On three heterogeneous processors from Intel, AMD and nVidia, using 20 sparse matrices as a benchmark suite, the experimental results show that our method obtains significant performance improvement over the best existing CSR-based SpMV algorithms. The source code of this work is downloadable at https://github.com/bhSPARSE/Benchmark_SpMV_using_CSRComment: 22 pages, 8 figures, Published at Parallel Computing (PARCO