Control of pattern formation in excitable systems

Pattern formation embodies the beauty and complexity of nature. Some patterns like traveling and rotating waves are dynamic, while others such as dots and stripes are static. Both dynamic and static patterns have been observed in a variety of physiological and biological processes such as rotating action potential waves in the brain during sleep, traveling calcium waves in the cardiac muscle, static patterns on the skins of animals, and self-regulated patterns in the animal embryo. Excitable systems represent a class of ultrasensitive systems that are capable of generating different kinds of patterns depending on the interplay between activator and inhibitor dynamics. Through manipulation of different excitable parameters, a diverse array of traveling wave and standing wave patterns can be obtained. In this thesis, I use pattern formation theory to control the excitable systems involved in cell migration and neuroscience to alter the observed phenotype, in an attempt to affect the underlying biological process. Cell migration is critical in many processes such as cancer metastasis and wound healing. Cells move by extending periodic protrusions of their cortex, and recent years have shown that the cellular cortex is an excitable medium where waves of biochemical species organize the cellular protrusion. Altering the protrusive phenotype can drastically alter cell migration — that can potentially affect critical physiological processes. In the first part of this thesis, I use excitable wave theory to model and predict wave pattern changes in amoeboid cells. Using theories of pattern formation, key nodes of the underlying excitable network governing cell migration are altered — to drastically change the cellular migratory phenotype, moving from amoeboid cells to oscillatory cells and from cells that extend long finger-like protrusions to cells that sustain stable rings on the cortex, potentially uncovering a novel method of pattern formation. Excitable systems originated in neuroscience, where different patterns of activity reflect different brain states. Sleep is associated with slow waves, while repeated high-frequency waves are associated with epileptic seizures. These patterns arise from the interplay between the cerebral cortex and the thalamus, which form a closed-loop architecture. In the second part of this thesis, I use a three-layer two-dimensional thalamocortical model, to explore the different parameters that may influence different spatio-temporal dynamics on the cortex. This study reveals that inter- and intra-cortical connectivity, excitation-inhibition balance and synaptic strengths can influence the wave activity patterns, to recreate different dynamic patterns observed in different brain states

Psr1p interacts with SUN/sad1p and EB1/mal3p to establish the bipolar spindle

Regular Abstracts - Sunday Poster Presentations: no. 382During mitosis, interpolar microtubules from two spindle pole bodies (SPBs) interdigitate to create an antiparallel microtubule array for accommodating numerous regulatory proteins. Among these proteins, the kinesin-5 cut7p/Eg5 is the key player responsible for sliding apart antiparallel microtubules and thus helps in establishing the bipolar spindle. At the onset of mitosis, two SPBs are adjacent to one another with most microtubules running nearly parallel toward the nuclear envelope, creating an unfavorable microtubule configuration for the kinesin-5 kinesins. Therefore, how the cell organizes the antiparallel microtubule array in the first place at mitotic onset remains enigmatic. Here, we show that a novel protein psrp1p localizes to the SPB and plays a key role in organizing the antiparallel microtubule array. The absence of psr1+ leads to a transient monopolar spindle and massive chromosome loss. Further functional characterization demonstrates that psr1p is recruited to the SPB through interaction with the conserved SUN protein sad1p and that psr1p physically interacts with the conserved microtubule plus tip protein mal3p/EB1. These results suggest a model that psr1p serves as a linking protein between sad1p/SUN and mal3p/EB1 to allow microtubule plus ends to be coupled to the SPBs for organization of an antiparallel microtubule array. Thus, we conclude that psr1p is involved in organizing the antiparallel microtubule array in the first place at mitosis onset by interaction with SUN/sad1p and EB1/mal3p, thereby establishing the bipolar spindle.postprin

Removal of antagonistic spindle forces can rescue metaphase spindle length and reduce chromosome segregation defects

Regular Abstracts - Tuesday Poster Presentations: no. 1925Metaphase describes a phase of mitosis where chromosomes are attached and oriented on the bipolar spindle for subsequent segregation at anaphase. In diverse cell types, the metaphase spindle is maintained at a relatively constant length. Metaphase spindle length is proposed to be regulated by a balance of pushing and pulling forces generated by distinct sets of spindle microtubules and their interactions with motors and microtubule-associated proteins (MAPs). Spindle length appears important for chromosome segregation fidelity, as cells with shorter or longer than normal metaphase spindles, generated through deletion or inhibition of individual mitotic motors or MAPs, showed chromosome segregation defects. To test the force balance model of spindle length control and its effect on chromosome segregation, we applied fast microfluidic temperature-control with live-cell imaging to monitor the effect of switching off different combinations of antagonistic forces in the fission yeast metaphase spindle. We show that spindle midzone proteins kinesin-5 cut7p and microtubule bundler ase1p contribute to outward pushing forces, and spindle kinetochore proteins kinesin-8 klp5/6p and dam1p contribute to inward pulling forces. Removing these proteins individually led to aberrant metaphase spindle length and chromosome segregation defects. Removing these proteins in antagonistic combination rescued the defective spindle length and, in some combinations, also partially rescued chromosome segregation defects. Our results stress the importance of proper chromosome-to-microtubule attachment over spindle length regulation for proper chromosome segregation.postprin

Plant Physiology, Development and Metabolism

Water is one of the most important constituents of life. Chemically, water is the hydride of oxygen. Oxygen, being more electronegative, exerts a strong attractive pull on its electrons. This unequal attraction results in small positive charge on twohydrogenmoleculesandasmallnegativechargeontheoxygenmolecule.The two lone pairs of electrons of the oxygen molecule result in bending of water molecule. The partial charges on oxygen and hydrogen molecules result in high electric dipole moment and polarity of water molecule

Brain Injury

The present two volume book "Brain Injury" is distinctive in its presentation and includes a wealth of updated information on many aspects in the field of brain injury. The Book is devoted to the pathogenesis of brain injury, concepts in cerebral blood flow and metabolism, investigative approaches and monitoring of brain injured, different protective mechanisms and recovery and management approach to these individuals, functional and endocrine aspects of brain injuries, approaches to rehabilitation of brain injured and preventive aspects of traumatic brain injuries. The collective contribution from experts in brain injury research area would be successfully conveyed to the readers and readers will find this book to be a valuable guide to further develop their understanding about brain injury

Development of biomedical devices for the extracorporeal real-time monitoring and perfusion of transplant organs

The goal of this Thesis is to develop a range of technologies that could enable a paradigm shift in organ preservation for renal transplantation, transitioning from static cold storage to warm normothermic blood perfusion. This transition could enable the development of novel pre-implantation therapies, and even serve as the foundation for a global donor pool. A low-hæmolysis pump was developed, based on a design first proposed by Nikola Tesla in 1913. Simulations demonstrated the theoretical superiority of this design over existing centrifugal pumps for blood recirculation, and provided insights for future avenues of research into this technology. A miniature, battery-powered, multimodal sensor suite for the in-line monitoring of a blood perfusion circuit was designed and implemented. This was named the ‘SmartPipe’, and proved capable of simultaneously monitoring temperature, pressure and blood oxygen saturations over the biologically-relevant ranges of each modality. Finally, the Thesis details the successful implementation and optimisation of a combined microfluidic and microdialysis system for the real-time quantitation of creatinine in blood or urine through amperometric sensing, to act as a live renal function monitor. The range of detection was 4.3μM – 500μM, with the possibility of extending this in both directions. This work also details and explores a novel methodology for functional monitoring in closed-loop systems which avoids the need for sensor calibration, and potentially overcomes the problems of sensor drift and desensitisation.Open Acces

New Techniques in Gastrointestinal Endoscopy

As result of progress, endoscopy has became more complex, using more sophisticated devices and has claimed a special form. In this moment, the gastroenterologist performing endoscopy has to be an expert in macroscopic view of the lesions in the gut, with good skills for using standard endoscopes, with good experience in ultrasound (for performing endoscopic ultrasound), with pathology experience for confocal examination. It is compulsory to get experience and to have patience and attention for the follow-up of thousands of images transmitted during capsule endoscopy or to have knowledge in physics necessary for autofluorescence imaging endoscopy. Therefore, the idea of an endoscopist has changed. Examinations mentioned need a special formation, a superior level of instruction, accessible to those who have already gained enough experience in basic diagnostic endoscopy. This is the reason for what these new issues of endoscopy are presented in this book of New techniques in Gastrointestinal Endoscopy

Life Sciences Program Tasks and Bibliography for FY 1997

This document includes information on all peer reviewed projects funded by the Office of Life and Microgravity Sciences and Applications, Life Sciences Division during fiscal year 1997. This document will be published annually and made available to scientists in the space life sciences field both as a hard copy and as an interactive internet web page

Abstracts on Radio Direction Finding (1899 - 1995)

The files on this record represent the various databases that originally composed the CD-ROM issue of "Abstracts on Radio Direction Finding" database, which is now part of the Dudley Knox Library's Abstracts and Selected Full Text Documents on Radio Direction Finding (1899 - 1995) Collection. (See Calhoun record https://calhoun.nps.edu/handle/10945/57364 for further information on this collection and the bibliography). Due to issues of technological obsolescence preventing current and future audiences from accessing the bibliography, DKL exported and converted into the three files on this record the various databases contained in the CD-ROM. The contents of these files are: 1) RDFA_CompleteBibliography_xls.zip [RDFA_CompleteBibliography.xls: Metadata for the complete bibliography, in Excel 97-2003 Workbook format; RDFA_Glossary.xls: Glossary of terms, in Excel 97-2003 Workbookformat; RDFA_Biographies.xls: Biographies of leading figures, in Excel 97-2003 Workbook format]; 2) RDFA_CompleteBibliography_csv.zip [RDFA_CompleteBibliography.TXT: Metadata for the complete bibliography, in CSV format; RDFA_Glossary.TXT: Glossary of terms, in CSV format; RDFA_Biographies.TXT: Biographies of leading figures, in CSV format]; 3) RDFA_CompleteBibliography.pdf: A human readable display of the bibliographic data, as a means of double-checking any possible deviations due to conversion

Dahlie, Scott (2017) Moving Islands, Shifting Perspectives: a Microhistorical Essay and Two Novellas (One Partial)

Travel reading inspired me to visit Vanuatu in 2003. Once there, I found a country that contained traces of what I had read, but also very different stories and life-­‐ways. I have since noticed reductions similar to those I found in travel writing in other literatures concerning the archipelago. I have written the fiction and microhistorical essay contained in this thesis as a way of complicating and perhaps widening perspectives on Vanuatu and the imperialisms experienced there. In his article ‘Against Ethnography’ historical anthropologist Nicholas Thomas cautions against what he describes as anthropology’s gravitation towards exoticism. As practitioners translate fieldwork into provocative ethnography, disciplinary demands and authorial desires to produce successful ethnographic work often lead to the creation of what Thomas calls ‘persuasive’ or ‘analytic fictions’ that over-­‐represent cultural difference. In Vanuatu these pressures are not limited to anthropology; they equally apply to travel writing and other literatures. This raises the question of how we might write in ways that evoke more than exotic cultural difference in the islands while not fabricating cultural difference’s absence. How do we write compelling, non-­‐reductive stories and histories that represent Vanuatu’s intra and inter-­‐cultural conflicts, resolutions, and enduring complexities? This thesis draws upon various archives, scholarly publications, fiction, travel writing, oral histories, notes from visits and fieldwork in the islands in 2003 and 2014, as well as relationships, begun in England, with former expatriates to Vanuatu or the erstwhile New Hebrides. In my microhistorical essay and novellas I endeavor to recover, recreate and reify experiences of Vanuatu that are multivalent, multi-­‐vocal and multi-­‐ lateral. My work asserts that fiction, historical and contemporary, and the research that underwrites it can help us to regard Vanuatu and its past and present experiences of imperialism through a fresh paradigm that is inclusive, complex, and open-­‐ended