Building an IDE for the Calculational Derivation of Imperative Programs

In this paper, we describe an IDE called CAPS (Calculational Assistant for Programming from Specifications) for the interactive, calculational derivation of imperative programs. In building CAPS, our aim has been to make the IDE accessible to non-experts while retaining the overall flavor of the pen-and-paper calculational style. We discuss the overall architecture of the CAPS system, the main features of the IDE, the GUI design, and the trade-offs involved.Comment: In Proceedings F-IDE 2015, arXiv:1508.0338

Unwind: Interactive Fish Straightening

The ScanAllFish project is a large-scale effort to scan all the world's 33,100 known species of fishes. It has already generated thousands of volumetric CT scans of fish species which are available on open access platforms such as the Open Science Framework. To achieve a scanning rate required for a project of this magnitude, many specimens are grouped together into a single tube and scanned all at once. The resulting data contain many fish which are often bent and twisted to fit into the scanner. Our system, Unwind, is a novel interactive visualization and processing tool which extracts, unbends, and untwists volumetric images of fish with minimal user interaction. Our approach enables scientists to interactively unwarp these volumes to remove the undesired torque and bending using a piecewise-linear skeleton extracted by averaging isosurfaces of a harmonic function connecting the head and tail of each fish. The result is a volumetric dataset of a individual, straight fish in a canonical pose defined by the marine biologist expert user. We have developed Unwind in collaboration with a team of marine biologists: Our system has been deployed in their labs, and is presently being used for dataset construction, biomechanical analysis, and the generation of figures for scientific publication

Image segmentation evaluation using an integrated framework

In this paper we present a general framework we have developed for running and evaluating automatic image and video segmentation algorithms. This framework was designed to allow effortless integration of existing and forthcoming image segmentation algorithms, and allows researchers to focus more on the development and evaluation of segmentation methods, relying on the framework for encoding/decoding and visualization. We then utilize this framework to automatically evaluate four distinct segmentation algorithms, and present and discuss the results and statistical findings of the experiment

Structured Knowledge Representation for Image Retrieval

We propose a structured approach to the problem of retrieval of images by content and present a description logic that has been devised for the semantic indexing and retrieval of images containing complex objects. As other approaches do, we start from low-level features extracted with image analysis to detect and characterize regions in an image. However, in contrast with feature-based approaches, we provide a syntax to describe segmented regions as basic objects and complex objects as compositions of basic ones. Then we introduce a companion extensional semantics for defining reasoning services, such as retrieval, classification, and subsumption. These services can be used for both exact and approximate matching, using similarity measures. Using our logical approach as a formal specification, we implemented a complete client-server image retrieval system, which allows a user to pose both queries by sketch and queries by example. A set of experiments has been carried out on a testbed of images to assess the retrieval capabilities of the system in comparison with expert users ranking. Results are presented adopting a well-established measure of quality borrowed from textual information retrieval

A graphical user interface for Boolean query specification

On-line information repositories commonly provide keyword search facilities via textual query languages based on Boolean logic. However, there is evidence to suggest that the syntactical demands of such languages can lead to user errors and adversely affect the time that it takes users to form queries. Users also face difficulties because of the conflict in semantics between AND and OR when used in Boolean logic and English language. We suggest that graphical query languages, in particular Venn-like diagrams, can alleviate the problems that users experience when forming Boolean expressions with textual languages. We describe Vquery, a Venn-diagram based user interface to the New Zealand Digital Library (NZDL). The design of Vquery has been partly motivated by analysis of NZDL usage. We found that few queries contain more than three terms, use of the intersection operator dominates and that query refinement is common. A study of the utility of Venn diagrams for query specification indicates that with little or no training users can interpret and form Venn-like diagrams which accurately correspond to Boolean expressions. The utility of Vquery is considered and directions for future work are proposed