Discharge Summary Hospital Course Summarisation of In Patient Electronic Health Record Text with Clinical Concept Guided Deep Pre-Trained Transformer Models

Brief Hospital Course (BHC) summaries are succinct summaries of an entire hospital encounter, embedded within discharge summaries, written by senior clinicians responsible for the overall care of a patient. Methods to automatically produce summaries from inpatient documentation would be invaluable in reducing clinician manual burden of summarising documents under high time-pressure to admit and discharge patients. Automatically producing these summaries from the inpatient course, is a complex, multi-document summarisation task, as source notes are written from various perspectives (e.g. nursing, doctor, radiology), during the course of the hospitalisation. We demonstrate a range of methods for BHC summarisation demonstrating the performance of deep learning summarisation models across extractive and abstractive summarisation scenarios. We also test a novel ensemble extractive and abstractive summarisation model that incorporates a medical concept ontology (SNOMED) as a clinical guidance signal and shows superior performance in 2 real-world clinical data sets

POLIS: a probabilistic summarisation logic for structured documents

PhDAs the availability of structured documents, formatted in markup languages such as SGML, RDF, or XML, increases, retrieval systems increasingly focus on the retrieval of document-elements, rather than entire documents. Additionally, abstraction layers in the form of formalised retrieval logics have allowed developers to include search facilities into numerous applications, without the need of having detailed knowledge of retrieval models. Although automatic document summarisation has been recognised as a useful tool for reducing the workload of information system users, very few such abstraction layers have been developed for the task of automatic document summarisation. This thesis describes the development of an abstraction logic for summarisation, called POLIS, which provides users (such as developers or knowledge engineers) with a high-level access to summarisation facilities. Furthermore, POLIS allows users to exploit the hierarchical information provided by structured documents. The development of POLIS is carried out in a step-by-step way. We start by defining a series of probabilistic summarisation models, which provide weights to document-elements at a user selected level. These summarisation models are those accessible through POLIS. The formal definition of POLIS is performed in three steps. We start by providing a syntax for POLIS, through which users/knowledge engineers interact with the logic. This is followed by a definition of the logics semantics. Finally, we provide details of an implementation of POLIS. The final chapters of this dissertation are concerned with the evaluation of POLIS, which is conducted in two stages. Firstly, we evaluate the performance of the summarisation models by applying POLIS to two test collections, the DUC AQUAINT corpus, and the INEX IEEE corpus. This is followed by application scenarios for POLIS, in which we discuss how POLIS can be used in specific IR tasks

Towards Personalized and Human-in-the-Loop Document Summarization

The ubiquitous availability of computing devices and the widespread use of the internet have generated a large amount of data continuously. Therefore, the amount of available information on any given topic is far beyond humans' processing capacity to properly process, causing what is known as information overload. To efficiently cope with large amounts of information and generate content with significant value to users, we require identifying, merging and summarising information. Data summaries can help gather related information and collect it into a shorter format that enables answering complicated questions, gaining new insight and discovering conceptual boundaries. This thesis focuses on three main challenges to alleviate information overload using novel summarisation techniques. It further intends to facilitate the analysis of documents to support personalised information extraction. This thesis separates the research issues into four areas, covering (i) feature engineering in document summarisation, (ii) traditional static and inflexible summaries, (iii) traditional generic summarisation approaches, and (iv) the need for reference summaries. We propose novel approaches to tackle these challenges, by: i)enabling automatic intelligent feature engineering, ii) enabling flexible and interactive summarisation, iii) utilising intelligent and personalised summarisation approaches. The experimental results prove the efficiency of the proposed approaches compared to other state-of-the-art models. We further propose solutions to the information overload problem in different domains through summarisation, covering network traffic data, health data and business process data.Comment: PhD thesi

Evaluation Metrics in the Era of GPT-4: Reliably Evaluating Large Language Models on Sequence to Sequence Tasks

Large Language Models (LLMs) evaluation is a patchy and inconsistent landscape, and it is becoming clear that the quality of automatic evaluation metrics is not keeping up with the pace of development of generative models. We aim to improve the understanding of current models' performance by providing a preliminary and hybrid evaluation on a range of open and closed-source generative LLMs on three NLP benchmarks: text summarisation, text simplification and grammatical error correction (GEC), using both automatic and human evaluation. We also explore the potential of the recently released GPT-4 to act as an evaluator. We find that ChatGPT consistently outperforms many other popular models according to human reviewers on the majority of metrics, while scoring much more poorly when using classic automatic evaluation metrics. We also find that human reviewers rate the gold reference as much worse than the best models' outputs, indicating the poor quality of many popular benchmarks. Finally, we find that GPT-4 is capable of ranking models' outputs in a way which aligns reasonably closely to human judgement despite task-specific variations, with a lower alignment in the GEC task.Comment: Accepted at EMNLP 202

Detecting and Mitigating Hallucinations in Multilingual Summarisation

Hallucinations pose a significant challenge to the reliability of neural models for abstractive summarisation. While automatically generated summaries may be fluent, they often lack faithfulness to the original document. This issue becomes even more pronounced in low-resource settings, such as cross-lingual transfer. With the existing faithful metrics focusing on English, even measuring the extent of this phenomenon in cross-lingual settings is hard. To address this, we first develop a novel metric, mFACT, evaluating the faithfulness of non-English summaries, leveraging translation-based transfer from multiple English faithfulness metrics. We then propose a simple but effective method to reduce hallucinations with a cross-lingual transfer, which weighs the loss of each training example by its faithfulness score. Through extensive experiments in multiple languages, we demonstrate that mFACT is the metric that is most suited to detect hallucinations. Moreover, we find that our proposed loss weighting method drastically increases both performance and faithfulness according to both automatic and human evaluation when compared to strong baselines for cross-lingual transfer such as MAD-X. Our code and dataset are available at https://github.com/yfqiu-nlp/mfact-summ

A Study of Automatic Metrics for the Evaluation of Natural Language Explanations

As transparency becomes key for robotics and AI, it will be necessary to evaluate the methods through which transparency is provided, including automatically generated natural language (NL) explanations. Here, we explore parallels between the generation of such explanations and the much-studied field of evaluation of Natural Language Generation (NLG). Specifically, we investigate which of the NLG evaluation measures map well to explanations. We present the ExBAN corpus: a crowd-sourced corpus of NL explanations for Bayesian Networks. We run correlations comparing human subjective ratings with NLG automatic measures. We find that embedding-based automatic NLG evaluation methods, such as BERTScore and BLEURT, have a higher correlation with human ratings, compared to word-overlap metrics, such as BLEU and ROUGE. This work has implications for Explainable AI and transparent robotic and autonomous systems.Comment: Accepted at EACL 202