1,578 research outputs found
Choosing Wavelet Methods, Filters, and Lengths for Functional Brain Network Construction
Wavelet methods are widely used to decompose fMRI, EEG, or MEG signals into
time series representing neurophysiological activity in fixed frequency bands.
Using these time series, one can estimate frequency-band specific functional
connectivity between sensors or regions of interest, and thereby construct
functional brain networks that can be examined from a graph theoretic
perspective. Despite their common use, however, practical guidelines for the
choice of wavelet method, filter, and length have remained largely
undelineated. Here, we explicitly explore the effects of wavelet method (MODWT
vs. DWT), wavelet filter (Daubechies Extremal Phase, Daubechies Least
Asymmetric, and Coiflet families), and wavelet length (2 to 24) - each
essential parameters in wavelet-based methods - on the estimated values of
network diagnostics and in their sensitivity to alterations in psychiatric
disease. We observe that the MODWT method produces less variable estimates than
the DWT method. We also observe that the length of the wavelet filter chosen
has a greater impact on the estimated values of network diagnostics than the
type of wavelet chosen. Furthermore, wavelet length impacts the sensitivity of
the method to detect differences between health and disease and tunes
classification accuracy. Collectively, our results suggest that the choice of
wavelet method and length significantly alters the reliability and sensitivity
of these methods in estimating values of network diagnostics drawn from graph
theory. They furthermore demonstrate the importance of reporting the choices
utilized in neuroimaging studies and support the utility of exploring wavelet
parameters to maximize classification accuracy in the development of biomarkers
of psychiatric disease and neurological disorders.Comment: working pape
3D medical volume segmentation using hybrid multiresolution statistical approaches
This article is available through the Brunel Open Access Publishing Fund. Copyright Ā© 2010 S AlZuābi and A Amira.3D volume segmentation is the process of partitioning voxels into 3D regions (subvolumes) that represent meaningful physical entities which are more meaningful and easier to analyze and usable in future applications. Multiresolution Analysis (MRA) enables the preservation of an image according to certain levels of resolution or blurring. Because of multiresolution quality, wavelets have been deployed in image compression, denoising, and classification. This paper focuses on the implementation of efficient medical volume segmentation techniques. Multiresolution analysis including 3D wavelet and ridgelet has been used for feature extraction which can be modeled using Hidden Markov Models (HMMs) to segment the volume slices. A comparison study has been carried out to evaluate 2D and 3D techniques which reveals that 3D methodologies can accurately detect the Region Of Interest (ROI). Automatic segmentation has been achieved using HMMs where the ROI is detected accurately but suffers a long computation time for its calculations
Graph Signal Processing: Overview, Challenges and Applications
Research in Graph Signal Processing (GSP) aims to develop tools for
processing data defined on irregular graph domains. In this paper we first
provide an overview of core ideas in GSP and their connection to conventional
digital signal processing. We then summarize recent developments in developing
basic GSP tools, including methods for sampling, filtering or graph learning.
Next, we review progress in several application areas using GSP, including
processing and analysis of sensor network data, biological data, and
applications to image processing and machine learning. We finish by providing a
brief historical perspective to highlight how concepts recently developed in
GSP build on top of prior research in other areas.Comment: To appear, Proceedings of the IEE
Wavelets and sparse methods for image reconstruction and classification in neuroimaging
This dissertation contributes to neuroimaging literature in the fields of compressed sensing magnetic resonance imaging (CS-MRI) and image-based detection of Alzheimerās disease (AD). It consists of three main contributions, based on wavelets and sparse methods.
The first contribution is a method for wavelet packet basis optimisation for sparse approximation and compressed sensing reconstruction of magnetic resonance (MR) images of the brain. The proposed method is based on the basis search algorithm developed by Coifman and Wickerhauser, with a cost function designed specifically for compressed sensing. It is tested on MR images available from the Alzheimerās Disease Neuroimaging Initiative (ADNI).
The second contribution consists of evaluating and comparing several sparse classification methods in an application to detection of AD based on positron emission tomography (PET) images of the brain. This comparison includes univariate feature selection, feature clustering and classifiers that automatically select a small subset of features due to their mathematical or algorithmic construction. The evaluation is based on PET images available from ADNI.
The third contribution is proposing an extension of wavelet-based scattering networks (originally proposed by Mallat and Bruna) to three-dimensional tomographic images. The proposed extension is evaluated as a feature representation in an application to detection of AD based on MR images available from ADNI.
There are several possible extensions of the work presented in this dissertation. The wavelet packet basis search method proposed in the first contribution can be improved to take into account the coherence between the sparse approximation basis and the sensing basis. The evaluation presented in the second contribution can be extended with additional algorithms to make it more comprehensive. The three-dimensional scattering networks that are the core part of the third contribution can be combined with other machine learning methods, such as manifold learning or deep convolutional neural networks.
As a whole, the methods proposed in this dissertation contribute to the work towards efficient screening for Alzheimerās disease, by making MRI scans of the brain faster and helping to automate image analysis for AD detection.
The first contribution is a method for wavelet packet basis optimisation for sparse approximation and compressed sensing reconstruction of magnetic resonance (MR) images of the brain. The proposed method is based on the basis search algorithm developed by Coifman and Wickerhauser, with a cost function designed specifically for compressed sensing. It is tested on MR images available from the Alzheimerās Disease Neuroimaging Initiative (ADNI).
The second contribution consists of evaluating and comparing several sparse classification methods in an application to detection of AD based on positron emission tomography (PET) images of the brain. This comparison includes univariate feature selection, feature clustering and classifiers that automatically select a small subset of features due to their mathematical or algorithmic construction. The evaluation is based on PET images available from ADNI.
The third contribution is proposing an extension of wavelet-based scattering networks (originally proposed by Mallat and Bruna) to three-dimensional tomographic images. The proposed extension is evaluated as a feature representation in an application to detection of AD based on MR images available from ADNI.
There are several possible extensions of the work presented in this dissertation. The wavelet packet basis search method proposed in the first contribution can be improved to take into account the coherence between the sparse approximation basis and the sensing basis. The evaluation presented in the second contribution can be extended with additional algorithms to make it more comprehensive. The three-dimensional scattering networks that are the core part of the third contribution can be combined with other machine learning methods, such as manifold learning or deep convolutional neural networks.
This dissertation contributes to neuroimaging literature in the fields of compressed sensing magnetic resonance imaging (CS-MRI) and image-based detection of Alzheimerās disease (AD). It consists of three main contributions, based on wavelets and sparse methods.
The first contribution is a method for wavelet packet basis optimisation for sparse approximation and compressed sensing reconstruction of magnetic resonance (MR) images of the brain. The proposed method is based on the basis search algorithm developed by Coifman and Wickerhauser, with a cost function designed specifically for compressed sensing. It is tested on MR images available from the Alzheimerās Disease Neuroimaging Initiative (ADNI).
The second contribution consists of evaluating and comparing several sparse classification methods in an application to detection of AD based on positron emission tomography (PET) images of the brain. This comparison includes univariate feature selection, feature clustering and classifiers that automatically select a small subset of features due to their mathematical or algorithmic construction. The evaluation is based on PET images available from ADNI.
The third contribution is proposing an extension of wavelet-based scattering networks (originally proposed by Mallat and Bruna) to three-dimensional tomographic images. The proposed extension is evaluated as a feature representation in an application to detection of AD based on MR images available from ADNI.
There are several possible extensions of the work presented in this dissertation. The wavelet packet basis search method proposed in the first contribution can be improved to take into account the coherence between the sparse approximation basis and the sensing basis. The evaluation presented in the second contribution can be extended with additional algorithms to make it more comprehensive. The three-dimensional scattering networks that are the core part of the third contribution can be combined with other machine learning methods, such as manifold learning or deep convolutional neural networks.
As a whole, the methods proposed in this dissertation contribute to the work towards efficient screening for Alzheimerās disease, by making MRI scans of the brain faster and helping to automate image analysis for AD detection.Open Acces
Modeling Stroke Diagnosis with the Use of Intelligent Techniques
The purpose of this work is to test the efficiency of specific intelligent classification algorithms when dealing with the domain of stroke medical diagnosis. The dataset consists of patient records of the āAcute Stroke Unitā, Alexandra Hospital, Athens, Greece, describing patients suffering one of 5 different stroke types diagnosed by 127 diagnostic attributes / symptoms collected during the first hours of the emergency stroke situation as well as during the hospitalization and recovery phase of the patients. Prior to the application of the intelligent classifier the dimensionality of the dataset is further reduced using a variety of classic and state of the art dimensionality reductions techniques so as to capture the intrinsic dimensionality of the data. The results obtained indicate that the proposed methodology achieves prediction accuracy levels that are comparable to those obtained by intelligent classifiers trained on the original feature space
Wavelet-Based Registration of Medical Images.
Registration is the process of spatially aligning two objects and is normally a preprocessing step in most object recognition algorithms. Registration of images and recognition of signatures of objects in images is important for clinical and diagnostic purposes in medicine. Recognizing structure, potential targets for defense purposes and changes in the terrain, from aerial surveillance images and SAR images is the focus of extensive research and development today. Automatic Target Recognition is becoming increasingly important as the defense systems and armament technology move to use smarter munitions. Registration of images is a preprocessing step in any kind of machine vision for robots, object recognition in general, etc. Registration is also important for tuning instruments dealing with images. Most of the available methods of registration today are operator assisted. The state of registration today is more art than science and there are no standards for measuring or validating registration procedures. This dissertation provides a viable method to automatically register images of rigid bodies. It provides a method to register CT and MRI images of the brain. It uses wavelets to determine sharp edges. Wavelets are oscillatory functions with compact support. The Wavelet Modulus Maxima singularides. It also provides a mechanism to characterize the singularities in the images using Lipschitz exponents. This research provides a procedure to register images which is computationally efficient. The algorithms and techniques are general enough to be applicable to other application domains. The discussion in this dissertation includes an introduction to wavelets and time frequency analysis, results on MRI data, a discussion on the limitations, and certain requirements for the procedure to work. This dissertation also tracks the movement of edges across scales when a wavelet algorithm is used and provides a formula for this edge movement. As part of this research a registration classification schematic was developed
Compressed Sensing - A New mode of Measurement
After introducing the concept of compressed sensing as a complementary
measurement mode to the classical Shannon-Nyquist approach, I discuss some of
the drivers, potential challenges and obstacles to its implementation. I end with a
speculative attempt to embed compressed sensing as an enabling methodology
within the emergence of data-driven discovery. As a consequence I predict the
growth of non-nomological sciences where heuristic correlations will find
applications but often bypass conventional pure basic and use-inspired basic
research stages due to the lack of verifiable hypotheses
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