The tree equivalence of linear recursion schemes

In the paper, a complete system of transformation rules preserving the tree equivalence and a polynomial-time algorithm deciding the tree equivalence of linear polyadic recursion schemes are proposed. The algorithm is formulated as a sequential transformation process which brings together the schemes in question. In the last step, the tree equivalence problem for the given schemes is reduced to a global flow analysis problem which is solved by an efficient marking algorithm

Dyson-Schwinger equations in the theory of computation

Following Manin's approach to renormalization in the theory of computation, we investigate Dyson-Schwinger equations on Hopf algebras, operads and properads of flow charts, as a way of encoding self-similarity structures in the theory of algorithms computing primitive and partial recursive functions and in the halting problem.Comment: 26 pages, LaTeX, final version, in "Feynman Amplitudes, Periods and Motives", Contemporary Mathematics, AMS 201

Importance sampling for Lambda-coalescents in the infinitely many sites model

We present and discuss new importance sampling schemes for the approximate computation of the sample probability of observed genetic types in the infinitely many sites model from population genetics. More specifically, we extend the 'classical framework', where genealogies are assumed to be governed by Kingman's coalescent, to the more general class of Lambda-coalescents and develop further Hobolth et. al.'s (2008) idea of deriving importance sampling schemes based on 'compressed genetrees'. The resulting schemes extend earlier work by Griffiths and Tavar\'e (1994), Stephens and Donnelly (2000), Birkner and Blath (2008) and Hobolth et. al. (2008). We conclude with a performance comparison of classical and new schemes for Beta- and Kingman coalescents.Comment: (38 pages, 40 figures

Completeness of Flat Coalgebraic Fixpoint Logics

Modal fixpoint logics traditionally play a central role in computer science, in particular in artificial intelligence and concurrency. The mu-calculus and its relatives are among the most expressive logics of this type. However, popular fixpoint logics tend to trade expressivity for simplicity and readability, and in fact often live within the single variable fragment of the mu-calculus. The family of such flat fixpoint logics includes, e.g., LTL, CTL, and the logic of common knowledge. Extending this notion to the generic semantic framework of coalgebraic logic enables covering a wide range of logics beyond the standard mu-calculus including, e.g., flat fragments of the graded mu-calculus and the alternating-time mu-calculus (such as alternating-time temporal logic ATL), as well as probabilistic and monotone fixpoint logics. We give a generic proof of completeness of the Kozen-Park axiomatization for such flat coalgebraic fixpoint logics.Comment: Short version appeared in Proc. 21st International Conference on Concurrency Theory, CONCUR 2010, Vol. 6269 of Lecture Notes in Computer Science, Springer, 2010, pp. 524-53

Complexity Theory and the Operational Structure of Algebraic Programming Systems

An algebraic programming system is a language built from a fixed algebraic data abstraction and a selection of deterministic, and non-deterministic, assignment and control constructs. First, we give a detailed analysis of the operational structure of an algebraic data type, one which is designed to classify programming systems in terms of the complexity of their implementations. Secondly, we test our operational description by comparing the computations in deterministic and non-deterministic programming systems under certain space and time restrictions

Recognizing Partial Cubes in Quadratic Time

We show how to test whether a graph with n vertices and m edges is a partial cube, and if so how to find a distance-preserving embedding of the graph into a hypercube, in the near-optimal time bound O(n^2), improving previous O(nm)-time solutions.Comment: 25 pages, five figures. This version significantly expands previous versions, including a new report on an implementation of the algorithm and experiments with i