Response Dynamics of Entorhinal Cortex in Awake, Anesthetized, and Bulbotomized Rats. <i>Brain Research</i> <b>911</b>(2)

The generation of oscillatory activity may be crucial to brain function. The coordination of individual neurons into rhythmic and coherently active populations is thought to result from interactions between excitatory and inhibitory cells mediated by local feedback connections. By using extracellular recording wires and silicon microprobes to measure electrically evoked damped oscillatory responses at the level of neural populations in the entorhinal cortex, and by using current-source density analysis to determine the spatial pattern of evoked responses, we show that the propagation of activity through the cortical circuit and consequent oscillations in the local field potential are dependent upon background neural activity. Pharmacological manipulations as well as surgical disconnection of the olfactory bulb serve to quell the background excitatory input incident to entorhinal cortex, resulting in evoked responses without characteristic oscillations and showing no signs of polysynaptic feedback. Electrical stimulation at 200 Hz applied to the lateral olfactory tract provides a substitute for the normal background activity emanating from the bulb and enables the generation of oscillatory responses once again. We conclude that a nonzero background level of activity is necessary and sufficient to sustain normal oscillatory responses and polysynaptic transmission through the entorhinal cortex

Bessel Functions in Mass Action. Modeling of Memories and Remembrances

Data from experimental observations of a class of neurological processes (Freeman K-sets) present functional distribution reproducing Bessel function behavior. We model such processes with couples of damped/amplified oscillators which provide time dependent representation of Bessel equation. The root loci of poles and zeros conform to solutions of K-sets. Some light is shed on the problem of filling the gap between the cellular level dynamics and the brain functional activity. Breakdown of time-reversal symmetry is related with the cortex thermodynamic features. This provides a possible mechanism to deduce lifetime of recorded memory.Comment: 16 pages, 9 figures, Physics Letters A, 2015 in pres

Simulation of Abnormal/Normal Brain States Using the KIV Model

Recent studies have focused on the phenomena of abnormal electrical brain activity which may transition into a debilitating seizure state through the entrainment of large populations of neurons.Starting from the initial epileptogenisis of a small population of abnormally firing neurons, to the mobilization of mesoscopic neuron populations behaving in a synchronous manner, a model has been formulated that captures the initial epileptogenisis to the semi-periodic entrainment of distant neuron populations.The normal non-linear dynamic signal captured through EEG, moves into a semi-periodic state, which can be quantified as the seizure state.Capturing the asynchronous/synchronous behavior of the normal/pathological brain state will be discussed.This model will also demonstrate how electrical stimulation applied to the limbic system restores the seizure state of the brain back to its original normal condition.Human brain states are modeled using a biologically inspired neural network, the KIV model.The KIV model exhibits the noisy, chaotic attributes found in the limbic system of brains of higher forms of organisms, and in its normal basal state, represents the homogeneous activity of millions of neuron activations.The KIV can exhibit the ’unbalanced state’ of neural activity, whereas when a small cluster of abnormal firing neurons starts to exhibit periodic neural firings that eventually entrain all the neurons within the limbic system, the network has moved into the ‘seizure’ state.These attributes have been found in human EEG recordings and have been duplicated in this model of the brain.The discussion in this dissertation covers the attributes found in human EEG data and models these attributes.Additionally, this model proposes a methodology to restore the modeled ‘seizure’ state, and by doing so, proposes a manner for external electrical titration to restore the abnormal seizure state back to a normal chaotic EEG signal state.Quantification measurements of normal, abnormal, and restoration to normal brain states will be exhibited using the following approaches:Analysis of human EEG dataQuantification measurements of brain states.Development of models of the different brain states, i.e. fit parameters of the model on individual personal data/history.Implementation of quantitative measurements on “restored” simulated seizure state

A Cortical Sparse Distributed Coding Model Linking Mini- and Macrocolumn-Scale Functionality

No generic function for the minicolumn – i.e., one that would apply equally well to all cortical areas and species – has yet been proposed. I propose that the minicolumn does have a generic functionality, which only becomes clear when seen in the context of the function of the higher-level, subsuming unit, the macrocolumn. I propose that: (a) a macrocolumn's function is to store sparse distributed representations of its inputs and to be a recognizer of those inputs; and (b) the generic function of the minicolumn is to enforce macrocolumnar code sparseness. The minicolumn, defined here as a physically localized pool of ∼20 L2/3 pyramidals, does this by acting as a winner-take-all (WTA) competitive module, implying that macrocolumnar codes consist of ∼70 active L2/3 cells, assuming ∼70 minicolumns per macrocolumn. I describe an algorithm for activating these codes during both learning and retrievals, which causes more similar inputs to map to more highly intersecting codes, a property which yields ultra-fast (immediate, first-shot) storage and retrieval. The algorithm achieves this by adding an amount of randomness (noise) into the code selection process, which is inversely proportional to an input's familiarity. I propose a possible mapping of the algorithm onto cortical circuitry, and adduce evidence for a neuromodulatory implementation of this familiarity-contingent noise mechanism. The model is distinguished from other recent columnar cortical circuit models in proposing a generic minicolumnar function in which a group of cells within the minicolumn, the L2/3 pyramidals, compete (WTA) to be part of the sparse distributed macrocolumnar code

Identification of the parameters of an electroencephalographic recording system

Elektroencefalografický záznamový systém slouží k vyšetření mozkové aktivity. Na základě tohoto vyšetření lze stanovit diagnózu některých nemocí, například epilepsie. Účelem této práce bylo zpracování signálu z toho systému a vytvoření modelového signálu, který bude s reálným signálem porovnán. Uměle vytvořený signál vychází z Jansenova matematického modelu, který byl dále implementován v prostředí MATLAB a rozšířen ze základního modelu na komplexnější zahrnující nelinearity a model rozhraní elektroda – elektrolyt. Dále bylo provedeno měření signálů na EEG fantomu a následná identifikace parametrů naměřených signálu. V první fázi byly testovány jednoduché signály. Identifikace parametrů těchto signálů sloužila k validaci daného EEG fantomu. V druhé fázi bylo přistoupeno k testování EEG signálů navržených podle matematického Jansenova modelu. Analýza veškerých signálů zahrnuje mimo jiné časově frekvenční analýzu či ověření platnosti principu superpozice.Electroencephalographic recording system is used to examine a brain activity. Based on this examination we can establish the diagnosis of certain diseases, such as epilepsy. The purpose of this study has been the signal processing and a signal generation which were compared with the real signal. Artificially generated signal is based on Jansen‘s mathematical model which has been also implemented in MATLAB and then that model has been extended to more complex model including nonlinearities and model electrode – electrolyte. Also a signal measurements on EEG phantom and identification of the parameters of these signals were performed. Firstly a simply signals were tested and the identification of their parameters has served to validate the EEG phantom. Secondly the created signal designed by Jansen model were tested also. Besides an analysis of all signals includes the time frequency analysis or a superposition principle testing.

Coupling and stochasticity in mesoscopic brain dynamics

The brain is known to operate under the constant influence of noise arising from a variety of sources. It also organises its activity into rhythms spanning multiple frequency bands. These rhythms originate from neuronal oscillations which can be detected via measurements such as electroen-cephalography (EEG) and functional magnetic resonance (fMRI). Experimental evidence suggests that interactions between rhythms from distinct frequency bands play a key role in brain processing, but the dynamical mechanisms underlying this cross-frequency interactions are still under investigation. Some rhythms are pathological and harmful to brain function. Such is the case of epileptiform rhythms characterising epileptic seizures. Much has been learnt about the dynamics of the brain from computational modelling. Particularly relevant is mesoscopic scale modelling, which is concerned with spatial scales exceeding those of individual neurons and corresponding to processes and structures underlying the generation of signals registered in the EEG and fMRI recordings. Such modelling usually involves assumptions regarding the characteristics of the background noise, which represents afferents from remote, non-modelled brain areas. To this end, Gaussian white noise, characterised by a flat power spectrum, is often used. In contrast, macroscopic fluctuations in the brain typically follow a `1/f b ¿ spectrum, which is a characteristic feature of temporally correlated, coloured noise. In Chapters 3-5 of this Thesis we address by means of a stochastically driven mesoscopic neuronal model, the three following questions. First, in Chapter 3 we ask about the significance of deviations from the assumption of white noise in the context of brain dynamics, and in particular we study the role that temporally correlated noise plays in eliciting aberrant rhythms in the model of an epileptic brain. We find that the generation of epileptiform dynamics in the model depends non-monotonically on the noise correlation time. We show that this is due to the maximisation of the spectral content of epileptogenic rhythms in the noise. These rhythms fall into frequency bands that indeed were experimentally shown to increase in power prior to epileptic seizures. We explain these effects in terms of the interplay between specific driving frequencies and bifurcation structure of the model. Second, in Chapter 4 we show how coupling between cortical modules leads to complex activity patterns and to the emergence of a phenomenon that we term collective excitability. Temporal patterns generated by this model bear resemblance to clinically observed characteristics of epileptic seizures. In that chapter we also introduce a fast method of tracking a loss of stability caused by excessive inter-modular coupling in a neuronal network. Third, in Chapter 5 we focus on cross-frequency interactions occurring in a network of cortical modules, in the presence of coloured noise. We suggest a mechanism that underlies the increase of power in a fast rhythm due to driving with a slow rhythm, and we find the noise parameters that best recapitulate experimental power spectra. Finally, in Chapter 6, we examine models of haemodynamic and metabolic brain processes, we test them on experimental data, and we consider the consequences of coupling them with mesoscopic neuronal models. Taken together, our results show the combined influence of noise and coupling in computational models of neuronal activity. Moreover, they demonstrate the relevance of dynamical properties of neuronal systems to specific physiological phenomena, in particular related to cross-frequency interactions and epilepsy. Insights from this Thesis could in the future empower studies of epilepsy as a dynamic disease, and could contribute to the development of treatment methods applicable to drug-resistant epileptic patients.El cervell opera sota la influència de sorolls amb diversos orígens. També organitza la seva activitat en una sèrie de ritmes que s'expandeixen en diverses bandes de freqüència. Aquests ritmes tenen el seu origen en les osci∙lacions neuronals i poden detectar-se via mesures com les electroencefalogràfiques (EEG) o la ressonància magnètica funcional (fMRI). Les evidències experimentals suggereixen que les interaccions entre ritmes operant en bandes de freqüència diferents juguen un paper central en el processat cerebral però els mecanismes dinàmics subjacents a les interaccions inter-freqüència encara estan investigant-se. Alguns ritmes són patològics i fan malbé el funcionament cerebral. És el cas dels ritmes epileptiformes que caracteritzen les convulsions epilèptiques. Fent servir el modelatge computacional s'ha après molt sobre la dinàmica del cervell. Especialment rellevant és el modelatge a l’escala mesoscòpica, que té a veure amb les escales espacials superiors a les de les neurones individuals i que correspon als processos que generen EEG i fMRI. Tal modelatge, en general, implica supòsits relatius a les característiques del soroll de fons que representa zones remotes del cervell no modelades. Amb aquesta finalitat s'utilitza sovint el soroll blanc gaussià, que es caracteritza per un espectre de potència pla. Les fluctuacions macroscòpiques en el cervell, però, normalment segueixen un espectre '1/fb', que és un tret característic de les correlacions temporals i el soroll de color. Als Capítols 3-5 d'aquesta tesi abordem mitjançant un model neuronal mesoscòpic forçat estocàsticament, les tres preguntes següents. En primer lloc, en el Capítol 3 ens preguntem sobre la importància de les desviacions de l'assumpció de soroll blanc en el context de la dinàmica del cervell i, en particular, estudiem el paper que juga el soroll amb correlació temporal en l'obtenció de ritmes aberrants d'un cervell epilèptic. Trobem que la generació de les dinàmiques epileptiformes depèn de forma monòtona del temps de correlació del soroll. Aquests ritmes es divideixen en bandes de freqüència que, segons, s'ha mostrat experimentalment, augmenten la seva potència espectral abans de les crisis epilèptiques. Expliquem aquests efectes en termes de la interacció entre les freqüències específiques del forçament i l'estructura de bifurcació del model. En segon lloc, en el Capítol 4 es mostra com l'acoblament entre mòduls corticals condueix a patrons d'activitat complexes i a l'aparició d'un fenomen que anomenem excitabilitat col∙lectiva. Els patrons temporals generats per aquest model s'assemblen a les observacions clíniques de les convulsions epilèptiques. En aquest capítol també introduïm un mètode d'anàlisi de la pèrdua d'estabilitat causada per l'acoblament inter-modular excessiu en les xarxes neuronals. En tercer lloc, en el Capítol 5 ens centrem en les interaccions inter-freqüència que es produeixen en una xarxa de mòduls corticals en presència de soroll de color. Suggerim un mecanisme subjacent a l'augment de la potència spectral de ritmes ràpids a causa del forçament amb un ritme lent, i veiem quins paràmetres del soroll descriuen millor els espectres de potència experimental. Finalment, en el Capítol 6, estudiem models dels processos hemodinàmics i metabòlics del cervell, els comparem amb dades experimentals i considerem les conseqüències del seu acoblament amb models neuronals mesoscopics. En conjunt, els nostres resultats mostren la influència combinada del soroll i l'acoblament en models computacionals de l'activitat neuronal. D'altra banda, també demostren la importància de les propietats dinàmiques dels sistemes neuronals en fenòmens fisiològics específics com les interaccions inter-frequència i l'epilèpsia. Els resultats d'aquesta Tesi contribueixen a potenciar l’estudi de l'epilèpsia com una malaltia dinàmica, i el desenvolupament de mètodes de tractament aplicables a pacients epilèptics resistents als fàrmacs.Postprint (published version

Mind out of matter: topics in the physical foundations of consciousness and cognition

This dissertation begins with an exploration of a brand of dual aspect monism and some problems deriving from the distinction between a first person and third person point of view. I continue with an outline of one way in which the conscious experience of the subject might arise from organisational properties of a material substrate. With this picture to hand, I first examine theoretical features at the level of brain organisation which may be required to support conscious experience and then discuss what bearing some actual attributes of biological brains might have on such experience. I conclude the first half of the dissertation with comments on information processing and with artificial neural networks meant to display simple varieties of the organisational features initially described abstractly.While the first half begins with a view of conscious experience and infers downwards in the organisational hierarchy to explore neural features suggested by the view, attention in the second half shifts towards analysing low level dynamical features of material substrates and inferring upwards to possible effects on experience. There is particular emphasis on clarifying the role of chaotic dynamics, and I discuss relationships between levels of description of a cognitive system and comment on issues of complexity, computability, and predictability before returning to the topic of representation which earlier played a central part in isolating features of brain organisation which may underlie conscious experience.Some themes run throughout the dissertation, including an emphasis on understanding experience from both the first person and the third person points of view and on analysing the latter at different levels of description. Other themes include a sustained effort to integrate the picture offered here with existing empirical data and to situate current problems in the philosophy of mind within the new framework, as well as an appeal to tools from mathematics, computer science, and cognitive science to complement the more standard philosophical repertoire