25,347 research outputs found
The Computational Structure of Spike Trains
Neurons perform computations, and convey the results of those computations
through the statistical structure of their output spike trains. Here we present
a practical method, grounded in the information-theoretic analysis of
prediction, for inferring a minimal representation of that structure and for
characterizing its complexity. Starting from spike trains, our approach finds
their causal state models (CSMs), the minimal hidden Markov models or
stochastic automata capable of generating statistically identical time series.
We then use these CSMs to objectively quantify both the generalizable structure
and the idiosyncratic randomness of the spike train. Specifically, we show that
the expected algorithmic information content (the information needed to
describe the spike train exactly) can be split into three parts describing (1)
the time-invariant structure (complexity) of the minimal spike-generating
process, which describes the spike train statistically; (2) the randomness
(internal entropy rate) of the minimal spike-generating process; and (3) a
residual pure noise term not described by the minimal spike-generating process.
We use CSMs to approximate each of these quantities. The CSMs are inferred
nonparametrically from the data, making only mild regularity assumptions, via
the causal state splitting reconstruction algorithm. The methods presented here
complement more traditional spike train analyses by describing not only spiking
probability and spike train entropy, but also the complexity of a spike train's
structure. We demonstrate our approach using both simulated spike trains and
experimental data recorded in rat barrel cortex during vibrissa stimulation.Comment: Somewhat different format from journal version but same conten
Transient Information Flow in a Network of Excitatory and Inhibitory Model Neurons: Role of Noise and Signal Autocorrelation
We investigate the performance of sparsely-connected networks of
integrate-and-fire neurons for ultra-short term information processing. We
exploit the fact that the population activity of networks with balanced
excitation and inhibition can switch from an oscillatory firing regime to a
state of asynchronous irregular firing or quiescence depending on the rate of
external background spikes.
We find that in terms of information buffering the network performs best for
a moderate, non-zero, amount of noise. Analogous to the phenomenon of
stochastic resonance the performance decreases for higher and lower noise
levels. The optimal amount of noise corresponds to the transition zone between
a quiescent state and a regime of stochastic dynamics. This provides a
potential explanation on the role of non-oscillatory population activity in a
simplified model of cortical micro-circuits.Comment: 27 pages, 7 figures, to appear in J. Physiology (Paris) Vol. 9
Bits from Biology for Computational Intelligence
Computational intelligence is broadly defined as biologically-inspired
computing. Usually, inspiration is drawn from neural systems. This article
shows how to analyze neural systems using information theory to obtain
constraints that help identify the algorithms run by such systems and the
information they represent. Algorithms and representations identified
information-theoretically may then guide the design of biologically inspired
computing systems (BICS). The material covered includes the necessary
introduction to information theory and the estimation of information theoretic
quantities from neural data. We then show how to analyze the information
encoded in a system about its environment, and also discuss recent
methodological developments on the question of how much information each agent
carries about the environment either uniquely, or redundantly or
synergistically together with others. Last, we introduce the framework of local
information dynamics, where information processing is decomposed into component
processes of information storage, transfer, and modification -- locally in
space and time. We close by discussing example applications of these measures
to neural data and other complex systems
Fractionally Predictive Spiking Neurons
Recent experimental work has suggested that the neural firing rate can be
interpreted as a fractional derivative, at least when signal variation induces
neural adaptation. Here, we show that the actual neural spike-train itself can
be considered as the fractional derivative, provided that the neural signal is
approximated by a sum of power-law kernels. A simple standard thresholding
spiking neuron suffices to carry out such an approximation, given a suitable
refractory response. Empirically, we find that the online approximation of
signals with a sum of power-law kernels is beneficial for encoding signals with
slowly varying components, like long-memory self-similar signals. For such
signals, the online power-law kernel approximation typically required less than
half the number of spikes for similar SNR as compared to sums of similar but
exponentially decaying kernels. As power-law kernels can be accurately
approximated using sums or cascades of weighted exponentials, we demonstrate
that the corresponding decoding of spike-trains by a receiving neuron allows
for natural and transparent temporal signal filtering by tuning the weights of
the decoding kernel.Comment: 13 pages, 5 figures, in Advances in Neural Information Processing
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