MOMIS: Exploiting agents to support information integration

Information overloading introduced by the large amount of data that is spread over the Internet must be faced in an appropriate way. The dynamism and the uncertainty of the Internet, along with the heterogeneity of the sources of information are the two main challenges for today's technologies related to information management. In the area of information integration, this paper proposes an approach based on mobile software agents integrated in the MOMIS (Mediator envirOnment for Multiple Information Sources) infrastructure, which enables semi-automatic information integration to deal with the integration and query of multiple, heterogeneous information sources (relational, object, XML and semi-structured sources). The exploitation of mobile agents in MOMIS can significantly increase the flexibility of the system. In fact, their characteristics of autonomy and adaptability well suit the distributed and open environments, such as the Internet. The aim of this paper is to show the advantages of the introduction in the MOMIS infrastructure of intelligent and mobile software agents for the autonomous management and coordination of integration and query processing over heterogeneous data sources

An Ontology-Based Data Integration System for Data and Multimedia Sources

Data integration is the problem of combining data residing at distributed heterogeneous sources, including multimedia sources, and providing the user with a unified view of these data. Ontology based Data Integration involves the use of ontology(s) to effectively combine data and information from multiple heterogeneous sources [16]. Ontologies, with respect to the integration of data sources, can be used for the identification and association of semantically correspond- ing information concepts, i.e. for the definition of semantic mappings among concepts of the information sources. MOMIS is a Data Integration System which performs in-formation extraction and integration from both structured and semi- structured data sources [6]. In [5] MOMIS was extended to manage “traditional” and “multimedia” data sources at the same time. STASIS is a comprehensive application suite which allows enterprises to simplify the mapping process between data schemas based on semantics [1]. Moreover, in STASIS, a general framework to perform Ontology-driven Semantic Mapping has been pro-posed [7]. This paper describes the early effort to combine the MOMIS and the STASIS frameworks in order to obtain an effective approach for Ontology-Based Data Integration for data and multimedia sources

The Italian National Registry for FSHD: an enhanced data integration and an analytics framework towards Smart Health Care and Precision Medicine for a rare disease

Background: The Italian Clinical network for FSHD (ICNF) has established the Italian National Registry for FSHD (INRF), collecting data from patients affected by Facioscapulohumeral dystrophy (FSHD) and their relatives. The INRF has gathered data from molecular analysis, clinical evaluation, anamnestic information, and family history from more than 3500 participants. Methods: A data management framework, called Mediator Environment for Multiple Information Sources (MOMIS) FSHD Web Platform, has been developed to provide charts, maps and search tools customized for specific needs. Patients’ samples and their clinical information derives from the Italian Clinical network for FSHD (ICNF), a consortium consisting of fourteen neuromuscular clinics distributed across Italy. The tools used to collect, integrate, and visualize clinical, molecular and natural history information about patients affected by FSHD and their relatives are described. Results: The INRF collected the molecular data regarding FSHD diagnosis conducted on 7197 subjects and identified 3362 individuals carrying a D4Z4 Reduced Allele (DRA): 1634 were unrelated index cases. In 1032 cases the molecular testing has been extended to 3747 relatives, 1728 carrying a DRA. Since 2009 molecular analysis has been accompanied by clinical evaluation based standardized evaluation protocols. In the period 2009–2020, 3577 clinical forms have been collected, 2059 follow the Comprehensive Clinical Evaluation form (CCEF). The integration of standardized clinical information and molecular data has made possible to demonstrate the wide phenotypic variability of FSHD. The MOMIS (Mediator Environment for Multiple Information Sources) data integration framework allowed performing genotype–phenotype correlation studies, and generated information of medical importance either for clinical practice or genetic counseling. Conclusion: The platform implemented for the FSHD Registry data collection based on OpenClinica meets the requirement to integrate patient/disease information, as well as the need to adapt dynamically to security and privacy concerns. Our results indicate that the quality of data collection in a multi-integrated approach is fundamental for clinical and epidemiological research in a rare disease and may have great value in allowing us to redefine diagnostic criteria and disease markers for FSHD. By extending the use of the MOMIS data integration framework to other countries and the longitudinal systematic collection of standardized clinical data will facilitate the understanding of disease natural history and offer valuable inputs towards trial readiness. This approach is of high significance to FSHD medical community and also to rare disease research in general

MOMIS Dashboard: a powerful data analytics tool for Industry 4.0

In this work we present the MOMIS Dashboard, an interactive data analytics tool to explore and visualize data sources content through several kind of dynamic views (e.g. maps, bar, line, pie, etc.). The software tool is very versatile, and supports the connection to the main relational DBMS and Big Data sources. Moreover, it can be connected to MOMIS, a powerful Open Source Data Integration system, able to integrate heterogeneous data sources as enterprise information systems as well as sensors data. MOMIS Dashboard provides a secure permission management to limit data access on the basis of a user role, and a Designer to create and share personalized insights on the company KPIs, facilitating the enterprise collaboration. We illustrate the MOMIS Dashboard efficacy in a real enterprise scenario: a production monitoring platform to analyze real-time and historical data collected through sensors located on production machines that optimize production, energy consumption, and enable preventive maintenance

Semantic Integration of heterogeneous data sources in the MOMIS Data Transformation System

In the last twenty years, many data integration systems following a classical wrapper/mediator architecture and providing a Global Virtual Schema (a.k.a. Global Virtual View - GVV) have been proposed by the research community. The main issues faced by these approaches range from system-level heterogeneities, to structural syntax level heterogeneities at the semantic level. Despite the research effort, all the approaches proposed require a lot of user intervention for customizing and managing the data integration and reconciliation tasks. In some cases, the effort and the complexity of the task is huge, since it requires the development of specific programming codes. Unfortunately, due to the specificity to be addressed, application codes and solutions are not frequently reusable in other domains. For this reason, the Lowell Report 2005 has provided the guideline for the definition of a public benchmark for information integration problem. The proposal, called THALIA (Test Harness for the Assessment of Legacy information Integration Approaches), focuses on how the data integration systems manage syntactic and semantic heterogeneities, which definitely are the greatest technical challenges in the field. We developed a Data Transformation System (DTS) that supports data transformation functions and produces query translation in order to push down to the sources the execution. Our DTS is based on MOMIS, a mediator-based data integration system that our research group is developing and supporting since 1999. In this paper, we show how the DTS is able to solve all the twelve queries of the THALIA benchmark by using a simple combination of declarative translation functions already available in the standard SQL language. We think that this is a remarkable result, mainly for two reasons: firstly to the best of our knowledge there is no system that has provided a complete answer to the benchmark, secondly, our queries does not require any overhead of new code

Melis: an incremental method for the lexical annotation of domain ontologies

In this paper, we present MELIS (Meaning Elicitation and Lexical Integration System), a method and a software tool for enabling an incremental process of automatic annotation of local schemas (e.g. relational database schemas, directory trees) with lexical information. The distinguishing and original feature of MELIS is the incremental process: the higher the number of schemas which are processed, the more background/domain knowledge is cumulated in the system (a portion of domain ontology is learned at every step), the better the performance of the systems on annotating new schemas.MELIS has been tested as component of MOMIS-Ontology Builder, a framework able to create a domain ontology representing a set of selected data sources, described with a standard W3C language wherein concepts and attributes are annotated according to the lexical reference database.We describe the MELIS component within the MOMIS-Ontology Builder framework and provide some experimental results of ME LIS as a standalone tool and as a component integrated in MOMIS

A genotypic and phenotypic information source for marker-assisted selection of cereals: the CEREALAB database

The CEREALAB database aims to store genotypic and phenotypic data obtained by the CEREALAB project and to integrate them with already existing data sources in order to create a tool for plant breeders and geneticists. The database can help them in unravelling the genetics of economically important phenotypic traits; in identifying and choosing molecular markers associated to key traits; and in choosing the desired parentals for breeding programs. The database is divided into three sub-schemas corresponding to the species of interest: wheat, barley and rice; each sub-schema is then divided into two sub-ontologies, regarding genotypic and phenotypic data, respectively