1,120 research outputs found
A Partitioning Algorithm for Maximum Common Subgraph Problems
We introduce a new branch and bound algorithm for the maximum common subgraph and maximum common connected subgraph problems which is based around vertex labelling and partitioning. Our method in some ways resembles a traditional constraint programming approach, but uses a novel compact domain store and supporting inference algorithms which dramatically reduce the memory and computation requirements during search, and allow better dual viewpoint ordering heuristics to be calculated cheaply. Experiments show a speedup of more than an order of magnitude over the state of the art, and demonstrate that we can operate on much larger graphs without running out of memory
Some hard families of parameterised counting problems
We consider parameterised subgraph-counting problems of the following form:
given a graph G, how many k-tuples of its vertices have a given property? A
number of such problems are known to be #W[1]-complete; here we substantially
generalise some of these existing results by proving hardness for two large
families of such problems. We demonstrate that it is #W[1]-hard to count the
number of k-vertex subgraphs having any property where the number of distinct
edge-densities of labelled subgraphs that satisfy the property is o(k^2). In
the special case that the property in question depends only on the number of
edges in the subgraph, we give a strengthening of this result which leads to
our second family of hard problems.Comment: A few more minor changes. This version to appear in the ACM
Transactions on Computation Theor
Minimal classes of graphs of unbounded clique-width defined by finitely many forbidden induced subgraphs
We discover new hereditary classes of graphs that are minimal (with respect
to set inclusion) of unbounded clique-width. The new examples include split
permutation graphs and bichain graphs. Each of these classes is characterised
by a finite list of minimal forbidden induced subgraphs. These, therefore,
disprove a conjecture due to Daligault, Rao and Thomasse from 2010 claiming
that all such minimal classes must be defined by infinitely many forbidden
induced subgraphs.
In the same paper, Daligault, Rao and Thomasse make another conjecture that
every hereditary class of unbounded clique-width must contain a labelled
infinite antichain. We show that the two example classes we consider here
satisfy this conjecture. Indeed, they each contain a canonical labelled
infinite antichain, which leads us to propose a stronger conjecture: that every
hereditary class of graphs that is minimal of unbounded clique-width contains a
canonical labelled infinite antichain.Comment: 17 pages, 7 figure
The parameterised complexity of counting connected subgraphs and graph motifs
We introduce a family of parameterised counting problems on graphs, p-#Induced Subgraph With Property(Φ), which generalises a number of problems which have previously been studied. This paper focuses on the case in which Φ defines a family of graphs whose edge-minimal elements all have bounded treewidth; this includes the special case in which Φ describes the property of being connected. We show that exactly counting the number of connected induced k-vertex subgraphs in an n-vertex graph is #W[1]-hard, but on the other hand there exists an FPTRAS for the problem; more generally, we show that there exists an FPTRAS for p-#Induced Subgraph With Property(Φ) whenever Φ is monotone and all the minimal graphs satisfying Φ have bounded treewidth. We then apply these results to a counting version of the Graph Motif problem
- …