Monadic Sequence Testing and Explicit Test-Refinements

We present an abstract framework for sequence testing that is implemented in Isabelle/HOL-TestGen. Our framework is based on the theory of state-exception monads, explicitly modelled in HOL, and can cope with typed input and output, interleaving executions including abort, and synchronisation. The framework is particularly geared towards symbolic execution and has proven effective in several large case-studies involving system models based on large (or infinite) state. On this basis, we rephrase the concept of test-refinements for inclusion, deadlock and IOCO-like tests, together with a formal theory of its rela- tion to traditional, IO-automata based notions

A Data Transformation System for Biological Data Sources

Scientific data of importance to biologists in the Human Genome Project resides not only in conventional databases, but in structured files maintained in a number of different formats (e.g. ASN.1 and ACE) as well a.s sequence analysis packages (e.g. BLAST and FASTA). These formats and packages contain a number of data types not found in conventional databases, such as lists and variants, and may be deeply nested. We present in this paper techniques for querying and transforming such data, and illustrate their use in a prototype system developed in conjunction with the Human Genome Center for Chromosome 22. We also describe optimizations performed by the system, a crucial issue for bulk data

Identification of Design Principles

This report identifies those design principles for a (possibly new) query and transformation language for the Web supporting inference that are considered essential. Based upon these design principles an initial strawman is selected. Scenarios for querying the Semantic Web illustrate the design principles and their reflection in the initial strawman, i.e., a first draft of the query language to be designed and implemented by the REWERSE working group I4

Web Data Extraction, Applications and Techniques: A Survey

Web Data Extraction is an important problem that has been studied by means of different scientific tools and in a broad range of applications. Many approaches to extracting data from the Web have been designed to solve specific problems and operate in ad-hoc domains. Other approaches, instead, heavily reuse techniques and algorithms developed in the field of Information Extraction. This survey aims at providing a structured and comprehensive overview of the literature in the field of Web Data Extraction. We provided a simple classification framework in which existing Web Data Extraction applications are grouped into two main classes, namely applications at the Enterprise level and at the Social Web level. At the Enterprise level, Web Data Extraction techniques emerge as a key tool to perform data analysis in Business and Competitive Intelligence systems as well as for business process re-engineering. At the Social Web level, Web Data Extraction techniques allow to gather a large amount of structured data continuously generated and disseminated by Web 2.0, Social Media and Online Social Network users and this offers unprecedented opportunities to analyze human behavior at a very large scale. We discuss also the potential of cross-fertilization, i.e., on the possibility of re-using Web Data Extraction techniques originally designed to work in a given domain, in other domains.Comment: Knowledge-based System

On the computational complexity of dynamic slicing problems for program schemas

This is the preprint version of the Article - Copyright @ 2011 Cambridge University PressGiven a program, a quotient can be obtained from it by deleting zero or more statements. The field of program slicing is concerned with computing a quotient of a program that preserves part of the behaviour of the original program. All program slicing algorithms take account of the structural properties of a program, such as control dependence and data dependence, rather than the semantics of its functions and predicates, and thus work, in effect, with program schemas. The dynamic slicing criterion of Korel and Laski requires only that program behaviour is preserved in cases where the original program follows a particular path, and that the slice/quotient follows this path. In this paper we formalise Korel and Laski's definition of a dynamic slice as applied to linear schemas, and also formulate a less restrictive definition in which the path through the original program need not be preserved by the slice. The less restrictive definition has the benefit of leading to smaller slices. For both definitions, we compute complexity bounds for the problems of establishing whether a given slice of a linear schema is a dynamic slice and whether a linear schema has a non-trivial dynamic slice, and prove that the latter problem is NP-hard in both cases. We also give an example to prove that minimal dynamic slices (whether or not they preserve the original path) need not be unique.This work was partly supported by the Engineering and Physical Sciences Research Council, UK, under grant EP/E002919/1

Reducing the Cost of Precise Types

Programs involving precise types enforce more properties via type checking, but precise types also prevent the reuse of functions throughout a program since no single precise type is used throughout a large program. My work is a step toward eliminating the underlying dilemma regarding type precision versus function reuse. It culminates in a novel traversal operator that recovers the reuse by automating most of each conversion between "similar" precise types, for a notion of similarity that I characterize in both the intuitive and technical senses. The benefits of my techniques are clear in side-by-side comparisons; in particular, I apply my techniques to two definitions of lambda-lifting. I present and implement my techniques in the Haskell programming language, but the fundamental ideas are applicable to any statically- and strongly-typed programming functional language with algebraic data types