Run-time parallelization and scheduling of loops

Run time methods are studied to automatically parallelize and schedule iterations of a do loop in certain cases, where compile-time information is inadequate. The methods presented involve execution time preprocessing of the loop. At compile-time, these methods set up the framework for performing a loop dependency analysis. At run time, wave fronts of concurrently executable loop iterations are identified. Using this wavefront information, loop iterations are reordered for increased parallelism. Symbolic transformation rules are used to produce: inspector procedures that perform execution time preprocessing and executors or transformed versions of source code loop structures. These transformed loop structures carry out the calculations planned in the inspector procedures. Performance results are presented from experiments conducted on the Encore Multimax. These results illustrate that run time reordering of loop indices can have a significant impact on performance. Furthermore, the overheads associated with this type of reordering are amortized when the loop is executed several times with the same dependency structure

Run-time parallelization and scheduling of loops

The class of problems that can be effectively compiled by parallelizing compilers is discussed. This is accomplished with the doconsider construct which would allow these compilers to parallelize many problems in which substantial loop-level parallelism is available but cannot be detected by standard compile-time analysis. We describe and experimentally analyze mechanisms used to parallelize the work required for these types of loops. In each of these methods, a new loop structure is produced by modifying the loop to be parallelized. We also present the rules by which these loop transformations may be automated in order that they be included in language compilers. The main application area of the research involves problems in scientific computations and engineering. The workload used in our experiment includes a mixture of real problems as well as synthetically generated inputs. From our extensive tests on the Encore Multimax/320, we have reached the conclusion that for the types of workloads we have investigated, self-execution almost always performs better than pre-scheduling. Further, the improvement in performance that accrues as a result of global topological sorting of indices as opposed to the less expensive local sorting, is not very significant in the case of self-execution

Comparing barrier algorithms

A barrier is a method for synchronizing a large number of concurrent computer processes. After considering some basic synchronization mechanisms, a collection of barrier algorithms with either linear or logarithmic depth are presented. A graphical model is described that profiles the execution of the barriers and other parallel programming constructs. This model shows how the interaction between the barrier algorithms and the work that they synchronize can impact their performance. One result is that logarithmic tree structured barriers show good performance when synchronizing fixed length work, while linear self-scheduled barriers show better performance when synchronizing fixed length work with an imbedded critical section. The linear barriers are better able to exploit the process skew associated with critical sections. Timing experiments, performed on an eighteen processor Flex/32 shared memory multiprocessor, that support these conclusions are detailed

Deterministic Consistency: A Programming Model for Shared Memory Parallelism

The difficulty of developing reliable parallel software is generating interest in deterministic environments, where a given program and input can yield only one possible result. Languages or type systems can enforce determinism in new code, and runtime systems can impose synthetic schedules on legacy parallel code. To parallelize existing serial code, however, we would like a programming model that is naturally deterministic without language restrictions or artificial scheduling. We propose "deterministic consistency", a parallel programming model as easy to understand as the "parallel assignment" construct in sequential languages such as Perl and JavaScript, where concurrent threads always read their inputs before writing shared outputs. DC supports common data- and task-parallel synchronization abstractions such as fork/join and barriers, as well as non-hierarchical structures such as producer/consumer pipelines and futures. A preliminary prototype suggests that software-only implementations of DC can run applications written for popular parallel environments such as OpenMP with low (<10%) overhead for some applications.Comment: 7 pages, 3 figure

Experiences with OpenMP in tmLQCD

An overview is given of the lessons learned from the introduction of multi-threading using OpenMP in tmLQCD. In particular, programming style, performance measurements, cache misses, scaling, thread distribution for hybrid codes, race conditions, the overlapping of communication and computation and the measurement and reduction of certain overheads are discussed. Performance measurements and sampling profiles are given for different implementations of the hopping matrix computational kernel.Comment: presented at the 31st International Symposium on Lattice Field Theory (Lattice 2013), 29 July - 3 August 2013, Mainz, German

A Review of Lightweight Thread Approaches for High Performance Computing

High-level, directive-based solutions are becoming the programming models (PMs) of the multi/many-core architectures. Several solutions relying on operating system (OS) threads perfectly work with a moderate number of cores. However, exascale systems will spawn hundreds of thousands of threads in order to exploit their massive parallel architectures and thus conventional OS threads are too heavy for that purpose. Several lightweight thread (LWT) libraries have recently appeared offering lighter mechanisms to tackle massive concurrency. In order to examine the suitability of LWTs in high-level runtimes, we develop a set of microbenchmarks consisting of commonly-found patterns in current parallel codes. Moreover, we study the semantics offered by some LWT libraries in order to expose the similarities between different LWT application programming interfaces. This study reveals that a reduced set of LWT functions can be sufficient to cover the common parallel code patterns andthat those LWT libraries perform better than OS threads-based solutions in cases where task and nested parallelism are becoming more popular with new architectures.The researchers from the Universitat Jaume I de Castelló were supported by project TIN2014-53495-R of the MINECO, the Generalitat Valenciana fellowship programme Vali+d 2015, and FEDER. This work was partially supported by the U.S. Dept. of Energy, Office of Science, Office of Advanced Scientific Computing Research (SC-21), under contract DEAC02-06CH11357. We gratefully acknowledge the computing resources provided and operated by the Joint Laboratory for System Evaluation (JLSE) at Argonne National Laboratory.Peer ReviewedPostprint (author's final draft

Loop Coalescing and Scheduling for Barrier MIMD Architectures

Barrier MIMDs are asynchronous Multiple Instruction stream Multiple Data stream architectures capable of parallel execution of variable execution time instructions and arbitrary control flow (e.g., while loops and calls); however, they differ from conventional MlMDs in that the need for run-time synchronization is significantly reduced. This work considers the problem of scheduling nested loop structures on a barrier MIMD. The basic approach employs loop coalescing, a technique for transforming a multiply-nested loop into a single loop. Loop coalescing is extended to nested triangular loops, in which inner loop bounds are functions of outer loop indices. Also, a more efficient scheme to generate the original loop indices from the coalesced index is proposed for the case of constant loop bounds. These results are general, and can be applied to extend previous work using loop coalescing techniques. We concentrate on using loop coalescing for scheduling barrier MIMDs, and show how previous work in loop transformations [Wol89], [Pol88] and linear scheduling theory [ShF88], rShO901 cart be applied to this problem

Efficient Parallelization of Short-Range Molecular Dynamics Simulations on Many-Core Systems

This article introduces a highly parallel algorithm for molecular dynamics simulations with short-range forces on single node multi- and many-core systems. The algorithm is designed to achieve high parallel speedups for strongly inhomogeneous systems like nanodevices or nanostructured materials. In the proposed scheme the calculation of the forces and the generation of neighbor lists is divided into small tasks. The tasks are then executed by a thread pool according to a dependent task schedule. This schedule is constructed in such a way that a particle is never accessed by two threads at the same time.Benchmark simulations on a typical 12 core machine show that the described algorithm achieves excellent parallel efficiencies above 80 % for different kinds of systems and all numbers of cores. For inhomogeneous systems the speedups are strongly superior to those obtained with spatial decomposition. Further benchmarks were performed on an Intel Xeon Phi coprocessor. These simulations demonstrate that the algorithm scales well to large numbers of cores.Comment: 12 pages, 8 figure

Software caching techniques and hardware optimizations for on-chip local memories

Despite the fact that the most viable L1 memories in processors are caches, on-chip local memories have been a great topic of consideration lately. Local memories are an interesting design option due to their many benefits: less area occupancy, reduced energy consumption and fast and constant access time. These benefits are especially interesting for the design of modern multicore processors since power and latency are important assets in computer architecture today. Also, local memories do not generate coherency traffic which is important for the scalability of the multicore systems. Unfortunately, local memories have not been well accepted in modern processors yet, mainly due to their poor programmability. Systems with on-chip local memories do not have hardware support for transparent data transfers between local and global memories, and thus ease of programming is one of the main impediments for the broad acceptance of those systems. This thesis addresses software and hardware optimizations regarding the programmability, and the usage of the on-chip local memories in the context of both single-core and multicore systems. Software optimizations are related to the software caching techniques. Software cache is a robust approach to provide the user with a transparent view of the memory architecture; but this software approach can suffer from poor performance. In this thesis, we start optimizing traditional software cache by proposing a hierarchical, hybrid software-cache architecture. Afterwards, we develop few optimizations in order to speedup our hybrid software cache as much as possible. As the result of the software optimizations we obtain that our hybrid software cache performs from 4 to 10 times faster than traditional software cache on a set of NAS parallel benchmarks. We do not stop with software caching. We cover some other aspects of the architectures with on-chip local memories, such as the quality of the generated code and its correspondence with the quality of the buffer management in local memories, in order to improve performance of these architectures. Therefore, we run our research till we reach the limit in software and start proposing optimizations on the hardware level. Two hardware proposals are presented in this thesis. One is about relaxing alignment constraints imposed in the architectures with on-chip local memories and the other proposal is about accelerating the management of local memories by providing hardware support for the majority of actions performed in our software cache.Malgrat les memòries cau encara son el component basic pel disseny del subsistema de memòria, les memòries locals han esdevingut una alternativa degut a les seves característiques pel que fa a l’ocupació d’àrea, el seu consum energètic i el seu rendiment amb un temps d’accés ràpid i constant. Aquestes característiques son d’especial interès quan les properes arquitectures multi-nucli estan limitades pel consum de potencia i la latència del subsistema de memòria.Les memòries locals pateixen de limitacions respecte la complexitat en la seva programació, fet que dificulta la seva introducció en arquitectures multi-nucli, tot i els avantatges esmentats anteriorment. Aquesta tesi presenta un seguit de solucions basades en programari i maquinari específicament dissenyat per resoldre aquestes limitacions.Les optimitzacions del programari estan basades amb tècniques d'emmagatzematge de memòria cau suportades per llibreries especifiques. La memòria cau per programari és un sòlid mètode per proporcionar a l'usuari una visió transparent de l'arquitectura, però aquest enfocament pot patir d'un rendiment deficient. En aquesta tesi, es proposa una estructura jeràrquica i híbrida. Posteriorment, desenvolupem optimitzacions per tal d'accelerar l’execució del programari que suporta el disseny de la memòria cau. Com a resultat de les optimitzacions realitzades, obtenim que el nostre disseny híbrid es comporta de 4 a 10 vegades més ràpid que una implementació tradicional de memòria cau sobre un conjunt d’aplicacions de referencia, com son els “NAS parallel benchmarks”.El treball de tesi inclou altres aspectes de les arquitectures amb memòries locals, com ara la qualitat del codi generat i la seva correspondència amb la qualitat de la gestió de memòria intermèdia en les memòries locals, per tal de millorar el rendiment d'aquestes arquitectures. La tesi desenvolupa propostes basades estrictament en el disseny de nou maquinari per tal de millorar el rendiment de les memòries locals quan ja no es possible realitzar mes optimitzacions en el programari. En particular, la tesi presenta dues propostes de maquinari: una relaxa les restriccions imposades per les memòries locals respecte l’alineament de dades, l’altra introdueix maquinari específic per accelerar les operacions mes usuals sobre les memòries locals