A unifying framework for seed sensitivity and its application to subset seeds

We propose a general approach to compute the seed sensitivity, that can be applied to different definitions of seeds. It treats separately three components of the seed sensitivity problem -- a set of target alignments, an associated probability distribution, and a seed model -- that are specified by distinct finite automata. The approach is then applied to a new concept of subset seeds for which we propose an efficient automaton construction. Experimental results confirm that sensitive subset seeds can be efficiently designed using our approach, and can then be used in similarity search producing better results than ordinary spaced seeds

XQuery Streaming by Forest Transducers

Streaming of XML transformations is a challenging task and only very few systems support streaming. Research approaches generally define custom fragments of XQuery and XPath that are amenable to streaming, and then design custom algorithms for each fragment. These languages have several shortcomings. Here we take a more principles approach to the problem of streaming XQuery-based transformations. We start with an elegant transducer model for which many static analysis problems are well-understood: the Macro Forest Transducer (MFT). We show that a large fragment of XQuery can be translated into MFTs --- indeed, a fragment of XQuery, that can express important features that are missing from other XQuery stream engines, such as GCX: our fragment of XQuery supports XPath predicates and let-statements. We then rely on a streaming execution engine for MFTs, one which uses a well-founded set of optimizations from functional programming, such as strictness analysis and deforestation. Our prototype achieves time and memory efficiency comparable to the fastest known engine for XQuery streaming, GCX. This is surprising because our engine relies on the OCaml built in garbage collector and does not use any specialized buffer management, while GCX's efficiency is due to clever and explicit buffer management.Comment: Full version of the paper in the Proceedings of the 30th IEEE International Conference on Data Engineering (ICDE 2014

Optimizing expected word error rate via sampling for speech recognition

State-level minimum Bayes risk (sMBR) training has become the de facto standard for sequence-level training of speech recognition acoustic models. It has an elegant formulation using the expectation semiring, and gives large improvements in word error rate (WER) over models trained solely using cross-entropy (CE) or connectionist temporal classification (CTC). sMBR training optimizes the expected number of frames at which the reference and hypothesized acoustic states differ. It may be preferable to optimize the expected WER, but WER does not interact well with the expectation semiring, and previous approaches based on computing expected WER exactly involve expanding the lattices used during training. In this paper we show how to perform optimization of the expected WER by sampling paths from the lattices used during conventional sMBR training. The gradient of the expected WER is itself an expectation, and so may be approximated using Monte Carlo sampling. We show experimentally that optimizing WER during acoustic model training gives 5% relative improvement in WER over a well-tuned sMBR baseline on a 2-channel query recognition task (Google Home)

DFKI finite-state machine toolkit

Finite-state devices such as finite-state automata and finite-state transducers have been known since the emergence of computer science and are recently extensively used in many areas of language technology. The use of finite-state devices is mainly motivated by their time and space efficiency. In this paper we present the Finite-State Machine Toolkit for building, combining and optimizing the finite-state machines, developed at the Language Technology Lab of the German Research Center for Artificial Intelligence

Linear Bounded Composition of Tree-Walking Tree Transducers: Linear Size Increase and Complexity

Compositions of tree-walking tree transducers form a hierarchy with respect to the number of transducers in the composition. As main technical result it is proved that any such composition can be realized as a linear bounded composition, which means that the sizes of the intermediate results can be chosen to be at most linear in the size of the output tree. This has consequences for the expressiveness and complexity of the translations in the hierarchy. First, if the computed translation is a function of linear size increase, i.e., the size of the output tree is at most linear in the size of the input tree, then it can be realized by just one, deterministic, tree-walking tree transducer. For compositions of deterministic transducers it is decidable whether or not the translation is of linear size increase. Second, every composition of deterministic transducers can be computed in deterministic linear time on a RAM and in deterministic linear space on a Turing machine, measured in the sum of the sizes of the input and output tree. Similarly, every composition of nondeterministic transducers can be computed in simultaneous polynomial time and linear space on a nondeterministic Turing machine. Their output tree languages are deterministic context-sensitive, i.e., can be recognized in deterministic linear space on a Turing machine. The membership problem for compositions of nondeterministic translations is nondeterministic polynomial time and deterministic linear space. The membership problem for the composition of a nondeterministic and a deterministic tree-walking tree translation (for a nondeterministic IO macro tree translation) is log-space reducible to a context-free language, whereas the membership problem for the composition of a deterministic and a nondeterministic tree-walking tree translation (for a nondeterministic OI macro tree translation) is possibly NP-complete

Automata-based adaptive behavior for economic modeling using game theory

In this paper, we deal with some specific domains of applications to game theory. This is one of the major class of models in the new approaches of modelling in the economic domain. For that, we use genetic automata which allow to buid adaptive strategies for the players. We explain how the automata-based formalism proposed - matrix representation of automata with multiplicities - allows to define a semi-distance between the strategy behaviors. With that tools, we are able to generate an automatic processus to compute emergent systems of entities whose behaviors are represented by these genetic automata