10,162 research outputs found
HPC Cloud for Scientific and Business Applications: Taxonomy, Vision, and Research Challenges
High Performance Computing (HPC) clouds are becoming an alternative to
on-premise clusters for executing scientific applications and business
analytics services. Most research efforts in HPC cloud aim to understand the
cost-benefit of moving resource-intensive applications from on-premise
environments to public cloud platforms. Industry trends show hybrid
environments are the natural path to get the best of the on-premise and cloud
resources---steady (and sensitive) workloads can run on on-premise resources
and peak demand can leverage remote resources in a pay-as-you-go manner.
Nevertheless, there are plenty of questions to be answered in HPC cloud, which
range from how to extract the best performance of an unknown underlying
platform to what services are essential to make its usage easier. Moreover, the
discussion on the right pricing and contractual models to fit small and large
users is relevant for the sustainability of HPC clouds. This paper brings a
survey and taxonomy of efforts in HPC cloud and a vision on what we believe is
ahead of us, including a set of research challenges that, once tackled, can
help advance businesses and scientific discoveries. This becomes particularly
relevant due to the fast increasing wave of new HPC applications coming from
big data and artificial intelligence.Comment: 29 pages, 5 figures, Published in ACM Computing Surveys (CSUR
LIKWID Monitoring Stack: A flexible framework enabling job specific performance monitoring for the masses
System monitoring is an established tool to measure the utilization and
health of HPC systems. Usually system monitoring infrastructures make no
connection to job information and do not utilize hardware performance
monitoring (HPM) data. To increase the efficient use of HPC systems automatic
and continuous performance monitoring of jobs is an essential component. It can
help to identify pathological cases, provides instant performance feedback to
the users, offers initial data to judge on the optimization potential of
applications and helps to build a statistical foundation about application
specific system usage. The LIKWID monitoring stack is a modular framework build
on top of the LIKWID tools library. It aims on enabling job specific
performance monitoring using HPM data, system metrics and application-level
data for small to medium sized commodity clusters. Moreover, it is designed to
integrate in existing monitoring infrastructures to speed up the change from
pure system monitoring to job-aware monitoring.Comment: 4 pages, 4 figures. Accepted for HPCMASPA 2017, the Workshop on
Monitoring and Analysis for High Performance Computing Systems Plus
Applications, held in conjunction with IEEE Cluster 2017, Honolulu, HI,
September 5, 201
Exploration of Reaction Pathways and Chemical Transformation Networks
For the investigation of chemical reaction networks, the identification of
all relevant intermediates and elementary reactions is mandatory. Many
algorithmic approaches exist that perform explorations efficiently and
automatedly. These approaches differ in their application range, the level of
completeness of the exploration, as well as the amount of heuristics and human
intervention required. Here, we describe and compare the different approaches
based on these criteria. Future directions leveraging the strengths of chemical
heuristics, human interaction, and physical rigor are discussed.Comment: 48 pages, 4 figure
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