Modelling data intensive web sites with OntoWeaver

This paper illustrates the OntoWeaver modelling approach, which relies on a set of comprehensive site ontologies to model all aspects of data intensive web sites and thus offers high level support for the design and development of data-intensive web sites. In particular, the OntoWeaver site ontologies comprise two components: a site view ontology and a presentation ontology. The site view ontology provides meta-models to allow for the composition of sophisticated site views, which allow end users to navigate and manipulate the underlying domain databases. The presentation ontology abstracts the look and feel for site views and makes it possible for the visual appearance and layout to be specified at a high level of abstractio

OntoWeaver S: supporting the design of knowledge portals

This paper presents OntoWeaver-S, an ontology-based infrastructure for building knowledge portals. In particular, OntoWeaver-S is integrated with a comprehensive web service platform, IRS-II, for the publication, discovery, and execution of web services. In this way, OntoWeaver-S supports the access and provision of remote web services for knowledge portals. Moreover, it provides a set of comprehensive site ontologies to model and represent knowledge portals, and thus is able to offer high level support for the design and development process. Finally, OntoWeaver-S provides a set of powerful tools to support knowledge portals at design time as well as at run time

A glimpse of the tropics : spiders (Araneae) in the greenhouses of the Botanic Garden Berlin-Dahlem

In a survey of the spider fauna in greenhouses of the Botanic Garden Berlin-Dahlem, 30 spider species were recorded. Two species are new to Europe: Theotima minutissima (Petrunkevitch, 1929) and Heteroonops spinimanus (Simon, 1891). T. minutissima is the first member of the family Ochyroceratidae reported from Europe. Oecobius navus Blackwall, 1859 is new to Central Europe. Triaeris stenaspis Simon, 1891, is recorded from Germany for the first time. Zodarion italicum (Canestrini, 1868) is new to eastern Germany. Despite the discovery of some species previously unknown to Germany, the spider fauna in the Botanic Garden consisted mainly of wellknown synanthropic species and common inhabitants of greenhouses. Several alien spiders recently found in greenhouses, garden centers and houses were not recorded in the Botanic Garden. The species composition of the exotic spider fauna in greenhouses seems to depend chiefly on the specific modes of acquisition of plants and plant substrate

Blueprint for a high-performance biomaterial: full-length spider dragline silk genes.

Spider dragline (major ampullate) silk outperforms virtually all other natural and manmade materials in terms of tensile strength and toughness. For this reason, the mass-production of artificial spider silks through transgenic technologies has been a major goal of biomimetics research. Although all known arthropod silk proteins are extremely large (>200 kiloDaltons), recombinant spider silks have been designed from short and incomplete cDNAs, the only available sequences. Here we describe the first full-length spider silk gene sequences and their flanking regions. These genes encode the MaSp1 and MaSp2 proteins that compose the black widow's high-performance dragline silk. Each gene includes a single enormous exon (>9000 base pairs) that translates into a highly repetitive polypeptide. Patterns of variation among sequence repeats at the amino acid and nucleotide levels indicate that the interaction of selection, intergenic recombination, and intragenic recombination governs the evolution of these highly unusual, modular proteins. Phylogenetic footprinting revealed putative regulatory elements in non-coding flanking sequences. Conservation of both upstream and downstream flanking sequences was especially striking between the two paralogous black widow major ampullate silk genes. Because these genes are co-expressed within the same silk gland, there may have been selection for similarity in regulatory regions. Our new data provide complete templates for synthesis of recombinant silk proteins that significantly improve the degree to which artificial silks mimic natural spider dragline fibers

Comparative study of spinning field development in two species of araneophagic spiders (Araneae, Mimetidae, Australomimetus)

External studies of spider spinning fields allow us to make inferences about internal silk gland biology, including what happens to silk glands when the spider molts. Such studies often focus on adults, but juveniles can provide additional insight on spinning apparatus development and character polarity. Here we document and describe spinning fields at all stadia in two species of pirate spider (Mimetidae: Australomimetus spinosus, A. djuka). Pirate spiders nest within the ecribellate orb-building spiders (Araneoidea), but are vagrant, araneophagic members that do not build prey-capture webs. Correspondingly, they lack aggregate and flagelliform silk glands (AG, FL), specialized for forming prey-capture lines in araneoid orb webs. However, occasional possible vestiges of an AG or FL spigot, as observed in one juvenile A. spinosus specimen, are consistent with secondary loss of AG and FL. By comparing spigots from one stadium to tartipores from the next stadium, silk glands can be divided into those that are tartipore-accommodated (T-A), and thus functional during proecdysis, and those that are not (non-T-A). Though evidence was more extensive in A. spinosus, it was likely true for both species that the number of non-T-A piriform silk glands (PI) was constant (two pairs) through all stadia, while numbers of T-A PI rose incrementally. The two species differed in that A. spinosus had T-A minor ampullate and aciniform silk glands (MiA, AC) that were absent in A. djuka. First instars of A. djuka, however, appeared to retain vestiges of T-A MiA spigots, consistent with a plesiomorphic state in which T-A MiA (called secondary MiA) are present. T-A AC have not previously been observed in Australomimetus and the arrangement of their spigots on posterior lateral spinnerets was unlike that seen thus far in other mimetid genera. Though new AC and T-A PI apparently form throughout much of a spider’s ontogeny, recurring spigot/tartipore arrangements indicated that AC and PI, after functioning during one stadium, were used again in each subsequent stadium (if non-T-A) or in alternate subsequent stadia (if T-A). In A. spinosus, sexual and geographic dimorphisms involving AC were noted. Cylindrical silk gland (CY) spigots were observed in mid-to-late juvenile, as well as adult, females of both species. Their use in juveniles, however, should not be assumed and only adult CY spigots had wide openings typical of mimetids. Neither species exhibited two pairs of modified PI spigots present in some adult male mimetids

Integrating web services into data intensive web sites

Designing web sites is a complex task. Ad-hoc rapid prototyping easily leads to unsatisfactory results, e.g. poor maintainability and extensibility. However, existing web design frameworks focus exclusively on data presentation: the development of specific functionalities is still achieved through low-level programming. In this paper we address this issue by describing our work on the integration of (semantic) web services into a web design framework, OntoWeaver. The resulting architecture, OntoWeaver-S, supports rapid prototyping of service centred data-intensive web sites, which allow access to remote web services. In particular, OntoWeaver-S is integrated with a comprehensive web service platform, IRS-II, for the specification, discovery, and execution of web services. Moreover, it employs a set of comprehensive site ontologies to model and represent all aspects of service-centred data-intensive web sites, and thus is able to offer high level support for the design and development process

Management Intensity and Forest Successional Stages as Significant Determinants of Small Mammal Communities in a Lowland Floodplain Forest

The conversion of forests from complex natural ecosystems to simplified commercial woodlands is one of the major causes of biodiversity loss. To maintain biodiversity, we need to understand how current management practices influence forest ecosystems. We studied the effects of forest successional stage and management intensity on the abundance, species richness, and assemblage composition of small mammals. Our results show that management intensity significantly contributes to reducing the number of species after clearcutting. We revealed that intensively managed clearings can make the dispersal or foraging activity of small mammals diffcult and hence negatively influence their abundance and species richness. The significantly higher species richness of small mammal species was recorded within more extensively rather than intensively managed clearings. In contrast, we did not observe significant changes in species richness and abundance after intensive management in old-growth forests. Species Clethrionomys glareolus and Apodemus flavicollis reached the greatest abundance in old-growth forest patches. On the other hand, Microtus arvalis and Microtus subterraneus were species mainly associated with the successionally youngest forest stands. Our analysis suggests that intensive management interventions (i.e., vegetation destruction by pesticides and wood debris removal by soil milling) in clearings produce unhostile environments for majority of the small mammal species.O

Evaluation of Arthropod Diversity and Abundance in Contrasting Habitat, Uyo, Akwa Ibom State, Nigeria

This study was conducted to determine the abundance and diversity of soil arthropods in Anua and Ekpri Nsukara farmland communities, Uyo, Nigeria from September to November, 2012. Soil arthropods were sampled using pitfall trap. A total of 707 Individuals of soil arthropods were encountered during the study period. Of the total number, 203 individuals were encountered in Anua while 504 in Ekpri Nsukara. Hymenoptera were the dominant taxa while the least was Blattodea in the two communities. Higher Shannon diversity index 1.3 was recorded in Anua while lower diversity index 0.86 was recorded in Ekpri Nsukara. Evenness ranged from 0.006 to 0.80 in Ekpri Nsukara and 0.02 to 0.61 in Anua. The lower abundance of soil arthropod in Anua community as compared to Ekpri Nsukara could be attributed to the partially open vegetation which exposes the arthropods to avoidable predators. © JASE

The treatment of navigation in web engineering

This paper aims at giving a global vision of the most popular web engineering approach. Web systems have woken up a high interest in companies and in the research community in the last years. Thus, techniques and methods are being proposed in order to offer a suitable framework to deal with the special characteristics of the web. For these reasons, some years ago a new line in the software engineering appeared. This line, then named web engineering, has grown in the last years, proving that web systems have special characteristics that require a special treatment. One of the most treated characteristic is the navigation. Navigation is a critical aspect in web systems and its suitable development in the life cycle is a basic need to guarantee the project quality. This survey shows how navigation is treated in 15 web proposals, which are the most referenced ones, and it analyses the available techniques, models and the possible gaps in the treatment