47 research outputs found
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Texture-Driven Coronary Artery Plaque Characterization Using Wavelet Packet Signatures
High-frequency ultrasound transducers are being widely used to generate high resolution, real time, cross-sectional images of the coronary arteries. In this paper, we present a robust unsupervised texture-derived technique based on multi-channel wavelet frames to delineate atherosclerotic plaque compositions. The intravascular ultrasound (IVUS) signals were acquired from coronary arteries dissected from 32 diseased cadaver hearts employing 40 MHz mechanically rotating, single-element transducers. The wavelet packet representations were classified using a K- means clustering algorithm to generate IVUS-histology color maps (IV-HCMs) and categorize tissues in lipidic, fibrotic and calcified. Finally, two independent observers evaluated the results contrasting the histology images corresponding to the IV-HCMs. Our results show that the proposed algorithm may have great potential as an alternative to existing spectrum-based classification techniques
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An Alternative Approach to Spectrum-Based Atherosclerotic Plaque Characterization Techniques Using Intravascular Ultrasound (IVUS) Backscattered Signals
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Automatic detection of blood versus non-blood regions on intravascular ultrasound (IVUS) images using wavelet packet signatures
Intravascular ultrasound (IVUS) has been proven a reliable imaging modality that is widely employed in cardiac interventional procedures. It can provide morphologic as well as pathologic information on the occluded plaques in the coronary arteries. In this paper, we present a new technique using wavelet packet analysis that differentiates between blood and non-blood regions on the IVUS images. We utilized the multi-channel texture segmentation algorithm based on the discrete wavelet packet frames (DWPF). A k-mean clustering algorithm was deployed to partition the extracted textural features into blood and non-blood in an unsupervised fashion. Finally, the geometric and statistical information of the segmented regions was used to estimate the closest set of pixels to the lumen border and a spline curve was fitted to the set. The presented algorithm may be helpful in delineating the lumen border automatically and more reliably prior to the process of plaque characterization, especially with 40 MHz transducers, where appearance of the red blood cells renders the border detection more challenging, even manually. Experimental results are shown and they are quantitatively compared with manually traced borders by an expert. It is concluded that our two dimensional (2-D) algorithm, which is independent of the cardiac and catheter motions performs well in both in-vivo and in-vitro cases
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Quantifying Atherosclerosis: IVUS Imaging For Lumen Border Detection And Plaque Characterization
The importance of atherosclerotic disease in coronary artery has been a subject of study for many researchers in the past decade. In brief, the aim is to understand progression of such a disease, detect plaques at risks (vulnerable plaques), and treat them selectively to prevent mortality and immobility. Consequently, several imaging modalities have been developed and among them intravascular ultrasound (IVUS) has been of particular interest since it provides useful information about tissues microstructures and images with sufficient penetration as well as resolution.
In general, the ultimate goal is to provide interventional cardiologists with reliable clinical tools so they can identify vulnerable plaques, make decisions confidently, choose the most appropriate drugs or implant devices (i.e. stent), and stabilize them during catheterization procedures with minimal risk. In this work, we review existing atherosclerotic tissue characterization algorithms including the state-of-the-art virtual histology (VH) framework, which has been implemented in the Volcano (Rancho Cordova, CA) IVUS clinical scanners using 64-elements 20 MHz phased-array transducer. Initially, we intended to extend this technique for data acquired with 40 MHz single-element transducers.
For this reason, we started acquiring in vitro IVUS data and studied involved challenges from specimen preparation toward classification. We observed inconsistency among extracted features along with transducer's spectral parameters (i.e. bandwidth, center frequency). This, in addition to infeasibility of construction of reliable training dataset due to heterogeneity of atherosclerotic tissues motivated us to develop an unsupervised texture-based atherosclerotic tissue characterization algorithm. We proposed a two-dimensional multiscale wavelet-based algorithm to expand IVUS backscattered signals and/or grayscale images onto orthogonal symmetric quadrature mirror filters (QMF) such as Lemarie-Battle.
At the bottom of decomposition tree, we employed ISODATA to cluster enveloped detected features in an unsupervised fashion and classify atherosclerotic plaque constitutes into fibrotic, lipidic, calcified, and no tissues. For the first time, we studied numbers of factors that were necessary for extension of in vitro derived classifier for in vivo applications such as reliability of classified tissues behind arc of calcified plaques and effects of pressure changes as well as flowing blood on constructed tissue color maps, called prognosis histology (PH) images.
The second half of this dissertation is devoted to automatic detection of lumen borders in IVUS grayscale images acquired with high frequency (40 MHz up) transducers where more scattering exhibited within lumen area that makes the problem of interest more challenging. We established our framework on three-dimensional expansion of IVUS sub-volumes onto orthonormal brushlet basis function. The rational behind our framework was presence of incoherent (i.e. blood) versus coherent (i.e. plaque, surrounding fat) textural patterns along pullback direction, which was motivated by what an interventional cardiologist does to locate the lumen border visually by going back and forth among IVUS frames. We studied the feasibility of brushlet analysis through filtering blood speckles and supervised classification of blood versus non-blood regions. Our preliminary study confirmed that the most informative features reside in the innermost cubes, representing low-frequency components in transformed domain.
Finally, we explored that tissue responses to IVUS signals are proportionally preserved in brushlet coefficients and it enabled us to classify blood regions in complex brushlet space. Subsequently, we employed surface function actives (SFA) to estimate the lumen borders after regularization. In a comparison study, we quantified our results with two of existing algorithms, employing IVUS grayscale images acquired with 40 MHz and 45 MHz single-element transducers. Overall, our proposed algorithm outperformed and the resulting automated detected borders showed good correlation with manually traced borders by an expert
A new approach for improving coronary plaque component analysis based on intravascular ultrasound images
Virtual histology intravascular ultrasound (VH-IVUS) is a clinically available technique for atherosclerosis plaque characterization. It, however, suffers from a poor longitudinal resolution due to electrocardiogram (ECG)-gated acquisition. This article presents an effective algorithm for IVUS image-based histology to overcome this limitation. After plaque area extraction within an input IVUS image, a textural analysis procedure consisting of feature extraction and classification steps is proposed. The pixels of the extracted plaque area excluding the shadow region were classified into one of the three plaque components of fibro-fatty (FF), calcification (CA) or necrotic core (NC) tissues. The average classification accuracy for pixel and region based validations is 75% and 87% respectively. Sensitivities (specificities) were 79% (85%) for CA, 81% (90%) for FF and 52% (82%) for NC. The kappa (kappa) = 0.61 and p value = 0.02 indicate good agreement of the proposed method with VH images. Finally, the enhancement in the longitudinal resolution was evaluated by reconstructing the IVUS images between the two sequential IVUS-VH images
Thin Cap Fibroatheroma Detection in Virtual Histology Images Using Geometric and Texture Features
Atherosclerotic plaque rupture is the most common mechanism responsible for a majority
of sudden coronary deaths. The precursor lesion of plaque rupture is thought to be a thin
cap fibroatheroma (TCFA), or “vulnerable plaque”. Virtual Histology-Intravascular Ultrasound
(VH-IVUS) images are clinically available for visualising colour-coded coronary artery tissue.
However, it has limitations in terms of providing clinically relevant information for identifying
vulnerable plaque. The aim of this research is to improve the identification of TCFA using VH-IVUS
images. To more accurately segment VH-IVUS images, a semi-supervised model is developed by
means of hybrid K-means with Particle Swarm Optimisation (PSO) and a minimum Euclidean
distance algorithm (KMPSO-mED). Another novelty of the proposed method is fusion of different
geometric and informative texture features to capture the varying heterogeneity of plaque components
and compute a discriminative index for TCFA plaque, while the existing research on TCFA detection
has only focused on the geometric features. Three commonly used statistical texture features are
extracted from VH-IVUS images: Local Binary Patterns (LBP), Grey Level Co-occurrence Matrix
(GLCM), and Modified Run Length (MRL). Geometric and texture features are concatenated in
order to generate complex descriptors. Finally, Back Propagation Neural Network (BPNN), kNN
(K-Nearest Neighbour), and Support Vector Machine (SVM) classifiers are applied to select the best
classifier for classifying plaque into TCFA and Non-TCFA. The present study proposes a fast and
accurate computer-aided method for plaque type classification. The proposed method is applied to 588 VH-IVUS images obtained from 10 patients. The results prove the superiority of the proposed
method, with accuracy rates of 98.61% for TCFA plaque.This research was funded by Universiti Teknologi Malaysia (UTM) under Research University
Grant Vot-02G31, and the Ministry of Higher Education Malaysia (MOHE) under the Fundamental Research Grant
Scheme (FRGS Vot-4F551) for the completion of the research. The work and the contribution were also supported
by the project Smart Solutions in Ubiquitous Computing Environments, Grant Agency of Excellence, University
of Hradec Kralove, Faculty of Informatics and Management, Czech Republic (under ID: UHK-FIM-GE-2018).
Furthermore, the research is also partially supported by the Spanish Ministry of Science, Innovation and
Universities with FEDER funds in the project TIN2016-75850-R
Optimization and Data Analysis in Biomedical Informatics
Abstract Intravascular ultrasound (IVUS) is a catheter-based medical imaging modality that is capable of providing cross-sectional images of the interior of blood vessels. A comprehensive analysis of the IVUS data allows collecting information about the morphology and structure of the vessel and the atherosclerotic plaque, if present. Atherosclerotic plaque formation is considered to be a part of an inflammatory process. Recent evidence has suggested that the presence and proliferation of vasa vasorum (VV) in the plaque is correlated with the increase of plaque inflammation and the processes which lead to its destabilization. Hence, the detection and measurement of VV in plaque has the potential to enable the development of an index of plaque vulnerability. In this paper, we review the research at the Computational Biomedicine Lab towards the development of a complete pipeline for the detection and quantification of extra-luminal blood detection from IVUS data which may be an indication of the existence of VV
Automatic segmentation of multi-stain histology images of arteries
Realitzat en col·laboració amb el centre o empresa: Northeastern University, Boston, US
Computer Vision Techniques for Transcatheter Intervention
Minimally invasive transcatheter technologies have demonstrated substantial promise for the diagnosis and treatment of cardiovascular diseases. For example, TAVI is an alternative to AVR for the treatment of severe aortic stenosis and TAFA is widely used for the treatment and cure of atrial fibrillation. In addition, catheter-based IVUS and OCT imaging of coronary arteries provides important information about the coronary lumen, wall and plaque characteristics. Qualitative and quantitative analysis of these cross-sectional image data will be beneficial for the evaluation and treatment of coronary artery diseases such as atherosclerosis. In all the phases (preoperative, intraoperative, and postoperative) during the transcatheter intervention procedure, computer vision techniques (e.g., image segmentation, motion tracking) have been largely applied in the field to accomplish tasks like annulus measurement, valve selection, catheter placement control, and vessel centerline extraction. This provides beneficial guidance for the clinicians in surgical planning, disease diagnosis, and treatment assessment. In this paper, we present a systematical review on these state-of-the-art methods.We aim to give a comprehensive overview for researchers in the area of computer vision on the subject of transcatheter intervention. Research in medical computing is multi-disciplinary due to its nature, and hence it is important to understand the application domain, clinical background, and imaging modality so that methods and quantitative measurements derived from analyzing the imaging data are appropriate and meaningful. We thus provide an overview on background information of transcatheter intervention procedures, as well as a review of the computer vision techniques and methodologies applied in this area