Texture spectrum coupled with entropy and homogeneity image features for myocardium muscle characterization

People in middle/later age often suffer from heart muscle damage due to coronary artery disease associated to myocardial infarction. In young people, the genetic forms of cardiomyopathies (heart muscle disease) are the utmost protuberant cause of myocardial disease. Accurate early detected information regarding the myocardial tissue structure is a key answer for tracking the progress of several myocardial diseases. The present work proposes a new method for myocardium muscle texture classification based on entropy, homogeneity and on the texture unit-based texture spectrum approaches. Entropy and homogeneity are generated in moving windows of size 3x3 and 5x5 to enhance the texture features and to create the premise of differentiation of the myocardium structures. Texture is then statistically analyzed using the texture spectrum approach. Texture classification is achieved based on a fuzzy c–means descriptive classifier. The noise sensitivity of the fuzzy c–means classifier is overcome by using the image features. The proposed method is tested on a dataset of 80 echocardiographic ultrasound images in both short-axis and long-axis in apical two chamber view representations, for normal and infarct pathologies. The results established that the entropy-based features provided superior clustering results compared to homogeneity

Automated classification of three-dimensional reconstructions of coral reefs using convolutional neural networks

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hopkinson, B. M., King, A. C., Owen, D. P., Johnson-Roberson, M., Long, M. H., & Bhandarkar, S. M. Automated classification of three-dimensional reconstructions of coral reefs using convolutional neural networks. PLoS One, 15(3), (2020): e0230671, doi: 10.1371/journal.pone.0230671.Coral reefs are biologically diverse and structurally complex ecosystems, which have been severally affected by human actions. Consequently, there is a need for rapid ecological assessment of coral reefs, but current approaches require time consuming manual analysis, either during a dive survey or on images collected during a survey. Reef structural complexity is essential for ecological function but is challenging to measure and often relegated to simple metrics such as rugosity. Recent advances in computer vision and machine learning offer the potential to alleviate some of these limitations. We developed an approach to automatically classify 3D reconstructions of reef sections and assessed the accuracy of this approach. 3D reconstructions of reef sections were generated using commercial Structure-from-Motion software with images extracted from video surveys. To generate a 3D classified map, locations on the 3D reconstruction were mapped back into the original images to extract multiple views of the location. Several approaches were tested to merge information from multiple views of a point into a single classification, all of which used convolutional neural networks to classify or extract features from the images, but differ in the strategy employed for merging information. Approaches to merging information entailed voting, probability averaging, and a learned neural-network layer. All approaches performed similarly achieving overall classification accuracies of ~96% and >90% accuracy on most classes. With this high classification accuracy, these approaches are suitable for many ecological applications.This study was funded by grants from the Alfred P. Sloan Foundation (BMH, BR2014-049; https://sloan.org), and the National Science Foundation (MHL, OCE-1657727; https://www.nsf.gov). The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript

Enhancing urban analysis through lacunarity multiscale measurement

Urban spatial configurations in most part of the developing countries showparticular urban forms associated with the more informal urban development ofthese areas. Latin American cities are prime examples of this sort, butinvestigation of these urban forms using up to date computational and analyticaltechniques are still scarce. The purpose of this paper is to examine and extendthe methodology of multiscale analysis for urban spatial patterns evaluation. Weexplain and explore the use of Lacunarity based measurements to follow a lineof research that might make more use of new satellite imagery information inurban planning contexts. A set of binary classifications is performed at differentthresholds on selected neighbourhoods of a small Brazilian town. Theclassifications are appraised and lacunarity measurements are compared in faceof the different geographic referenced information for the same neighbourhoodareas. It was found that even with the simple image classification procedure, animportant amount of spatial configuration characteristics could be extracted withthe analytical procedure that, in turn, may be used in planning and other urbanstudies purposes