Adaptive text mining: Inferring structure from sequences

Text mining is about inferring structure from sequences representing natural language text, and may be defined as the process of analyzing text to extract information that is useful for particular purposes. Although hand-crafted heuristics are a common practical approach for extracting information from text, a general, and generalizable, approach requires adaptive techniques. This paper studies the way in which the adaptive techniques used in text compression can be applied to text mining. It develops several examples: extraction of hierarchical phrase structures from text, identification of keyphrases in documents, locating proper names and quantities of interest in a piece of text, text categorization, word segmentation, acronym extraction, and structure recognition. We conclude that compression forms a sound unifying principle that allows many text mining problems to be tacked adaptively

Topic Map Generation Using Text Mining

Starting from text corpus analysis with linguistic and statistical analysis algorithms, an infrastructure for text mining is described which uses collocation analysis as a central tool. This text mining method may be applied to different domains as well as languages. Some examples taken form large reference databases motivate the applicability to knowledge management using declarative standards of information structuring and description. The ISO/IEC Topic Map standard is introduced as a candidate for rich metadata description of information resources and it is shown how text mining can be used for automatic topic map generation

Mining Measured Information from Text

We present an approach to extract measured information from text (e.g., a 1370 degrees C melting point, a BMI greater than 29.9 kg/m^2 ). Such extractions are critically important across a wide range of domains - especially those involving search and exploration of scientific and technical documents. We first propose a rule-based entity extractor to mine measured quantities (i.e., a numeric value paired with a measurement unit), which supports a vast and comprehensive set of both common and obscure measurement units. Our method is highly robust and can correctly recover valid measured quantities even when significant errors are introduced through the process of converting document formats like PDF to plain text. Next, we describe an approach to extracting the properties being measured (e.g., the property "pixel pitch" in the phrase "a pixel pitch as high as 352 {\mu}m"). Finally, we present MQSearch: the realization of a search engine with full support for measured information.Comment: 4 pages; 38th International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR '15

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis

Despite the availability of various data repositories for plant research, a wealth of information currently remains hidden within the biomolecular literature. Text mining provides the necessary means to retrieve these data through automated processing of texts. However, only recently has advanced text mining methodology been implemented with sufficient computational power to process texts at a large scale. In this study, we assess the potential of large-scale text mining for plant biology research in general and for network biology in particular using a state-of-the-art text mining system applied to all PubMed abstracts and PubMed Central full texts. We present extensive evaluation of the textual data for Arabidopsis thaliana, assessing the overall accuracy of this new resource for usage in plant network analyses. Furthermore, we combine text mining information with both protein-protein and regulatory interactions from experimental databases. Clusters of tightly connected genes are delineated from the resulting network, illustrating how such an integrative approach is essential to grasp the current knowledge available for Arabidopsis and to uncover gene information through guilt by association. All large-scale data sets, as well as the manually curated textual data, are made publicly available, hereby stimulating the application of text mining data in future plant biology studies

TEXT MINING – PREREQUISITE FOR KNOWLEDGE MANAGEMENT SYSTEMS

Text mining is an interdisciplinary field with the main purpose of retrieving new knowledge from large collections of text documents. This paper presents the main techniques used for knowledge extraction through text mining and their main areas of applicability and emphasizes the importance of text mining in knowledge management systems.text mining, knowledge systems, information retrieval