Pitfalls of using PQ-trees in Automatic Graph Drawing

A number of erroneous attempts involving PQ-trees in the context of automatic graph drawing algorithms have been presented in the literature in recent years. In order to prevent future research from constructing algorithms with similar errors we point out some of the major mistakes. In particular, we examine erroneous usage of the PQ-tree data structure in algorithms for computing maximal planar subgraphs and an algorithm for testing leveled planarity of leveled directed acyclic graphs with several sources and sinks

Capturing Topology in Graph Pattern Matching

Graph pattern matching is often defined in terms of subgraph isomorphism, an NP-complete problem. To lower its complexity, various extensions of graph simulation have been considered instead. These extensions allow pattern matching to be conducted in cubic-time. However, they fall short of capturing the topology of data graphs, i.e., graphs may have a structure drastically different from pattern graphs they match, and the matches found are often too large to understand and analyze. To rectify these problems, this paper proposes a notion of strong simulation, a revision of graph simulation, for graph pattern matching. (1) We identify a set of criteria for preserving the topology of graphs matched. We show that strong simulation preserves the topology of data graphs and finds a bounded number of matches. (2) We show that strong simulation retains the same complexity as earlier extensions of simulation, by providing a cubic-time algorithm for computing strong simulation. (3) We present the locality property of strong simulation, which allows us to effectively conduct pattern matching on distributed graphs. (4) We experimentally verify the effectiveness and efficiency of these algorithms, using real-life data and synthetic data.Comment: VLDB201

Finding 2-Edge and 2-Vertex Strongly Connected Components in Quadratic Time

We present faster algorithms for computing the 2-edge and 2-vertex strongly connected components of a directed graph, which are straightforward generalizations of strongly connected components. While in undirected graphs the 2-edge and 2-vertex connected components can be found in linear time, in directed graphs only rather simple $O(m n)$-time algorithms were known. We use a hierarchical sparsification technique to obtain algorithms that run in time $O(n^2)$. For 2-edge strongly connected components our algorithm gives the first running time improvement in 20 years. Additionally we present an $O(m^2 / \log{n})$-time algorithm for 2-edge strongly connected components, and thus improve over the $O(m n)$ running time also when $m = O(n)$. Our approach extends to k-edge and k-vertex strongly connected components for any constant k with a running time of $O(n^2 \log^2 n)$ for edges and $O(n^3)$ for vertices