OntoMaven: Maven-based Ontology Development and Management of Distributed Ontology Repositories

In collaborative agile ontology development projects support for modular reuse of ontologies from large existing remote repositories, ontology project life cycle management, and transitive dependency management are important needs. The Apache Maven approach has proven its success in distributed collaborative Software Engineering by its widespread adoption. The contribution of this paper is a new design artifact called OntoMaven. OntoMaven adopts the Maven-based development methodology and adapts its concepts to knowledge engineering for Maven-based ontology development and management of ontology artifacts in distributed ontology repositories.Comment: Pre-print submission to 9th International Workshop on Semantic Web Enabled Software Engineering (SWESE2013). Berlin, Germany, December 2-5, 201

Theory and Practice of Data Citation

Citations are the cornerstone of knowledge propagation and the primary means of assessing the quality of research, as well as directing investments in science. Science is increasingly becoming "data-intensive", where large volumes of data are collected and analyzed to discover complex patterns through simulations and experiments, and most scientific reference works have been replaced by online curated datasets. Yet, given a dataset, there is no quantitative, consistent and established way of knowing how it has been used over time, who contributed to its curation, what results have been yielded or what value it has. The development of a theory and practice of data citation is fundamental for considering data as first-class research objects with the same relevance and centrality of traditional scientific products. Many works in recent years have discussed data citation from different viewpoints: illustrating why data citation is needed, defining the principles and outlining recommendations for data citation systems, and providing computational methods for addressing specific issues of data citation. The current panorama is many-faceted and an overall view that brings together diverse aspects of this topic is still missing. Therefore, this paper aims to describe the lay of the land for data citation, both from the theoretical (the why and what) and the practical (the how) angle.Comment: 24 pages, 2 tables, pre-print accepted in Journal of the Association for Information Science and Technology (JASIST), 201

Gnome on the range: finding the hypertextual narratives in ancient wisdom texts

In this paper we present the Sharing Ancient WisdomS (SAWS) project. Working with wisdom texts, or gnomologia, the project aims to produce an enhanced digital scholarly edition of the collected manuscripts which both makes the Greek, Arabic and Spanish texts available and demonstrates the hypertexual nature of these texts. By positioning the texts as collections of sayings, of which a given manuscript only shows one narrative path, we demonstrate how a hypertextual approach allows us to explore alternate narrative paths within and across the texts and support researchers as they study the context, significance and transmission of the wisdoms within these works

A Comparative Study: Change Detection and Querying Dynamic XML Documents

The efficient management of the dynamic XML documents is a complex area of research. The changes and size of the XML documents throughout its lifetime are limitless. Change detection is an important part of version management to identify difference between successive versions of a document. Document content is continuously evolving. Users wanted to be able to query previous versions, query changes in documents, as well as to retrieve a particular document version efficiently. In this paper we provide comprehensive comparative analysis of various control schemes for change detection and querying dynamic XML documents

A Configuration Management System for Software Product Lines

Software product line engineering (SPLE) is a methodology for developing a family of software products in a particular domain by systematic reuse of shared code in order to improve product quality and reduce development time and cost. Currently, there are no software configuration management (SCM) tools that support software product line evolution. Conventional SCM tools are designed to support single product development. The use of conventional SCM tools forces developers to treat a software product line as a single software project by introducing new programming language constructs or using conditional compilation. We propose a research conguration management prototype called Molhado SPL that is designed specifically to support the evolution of software product lines. Molhado SPL addresses the evolution problem at the configuration level instead of at the code level. We studied the type of operations needed to support the evolution of software product lines and proposed a versioning model and eight cases of change propagation. Molhado SPL supports independent evolution of core assets and products, the sharing of code and the tracking relationships between products and shared code, and the eight cases of change propagation. The Molhado SPL consists of four layers with each layer providing a different type of service. At the heart of Molhado SPL are the versioning model, component object, shared component object, and project objects that allow for independent evolution of products and shared artifacts, for sharing, and for supporting change propagation. Furthermore,they allow product specific changes to shared code without interfering with the core asset that is shared. Products can also introduce product specific assets that only exist in that product. In order to for Molhado SPL to support product line, we implemented XML merging, feature model editing and debugging, and version-aware XML documents. To support merging of XML documents, we implemented a 3-way XML document merging algorithm that uses versioned data structures, change detection, and node identity. To support software product line derivation or modeling of software product line, we implemented support for feature model including editing and debugging. Finally, we created the version-aware XML document framework to support collaborative editing of XML documents without requiring a version repository. The version history is embedded in the documents using XML namespaces, so that the documents remain valid under the XML specification. The version-aware XML framework can also be used to support the exporting of documents from Molhado SPL repository to be edit outside and import back the change history made to the document. We evaluated Molhado SPL with two product lines: a document product line and a the graph data structures product line. This evaluation showed that Molhado SPL supports independently evolution of products and core assets and the eight change propagation cases. We did not evaluate MolhadoSPL in terms of scalability or usability. The main contributions of this dissertation research are: 1) Molhado SPL that supports the evolution of product lines, 2) a fast 3-way XML merge algorithm, 3) a version-aware XML document framework, and 4) a feature model editor and debugger

Ontologies on the semantic web

As an informational technology, the World Wide Web has enjoyed spectacular success. In just ten years it has transformed the way information is produced, stored, and shared in arenas as diverse as shopping, family photo albums, and high-level academic research. The “Semantic Web” was touted by its developers as equally revolutionary but has not yet achieved anything like the Web’s exponential uptake. This 17 000 word survey article explores why this might be so, from a perspective that bridges both philosophy and IT

Archiving scientific data

We present an archiving technique for hierarchical data with key structure. Our approach is based on the notion of timestamps whereby an element appearing in multiple versions of the database is stored only once along with a compact description of versions in which it appears. The basic idea of timestamping was discovered by Driscoll et. al. in the context of persistent data structures where one wishes to track the sequences of changes made to a data structure. We extend this idea to develop an archiving tool for XML data that is capable of providing meaningful change descriptions and can also efficiently support a variety of basic functions concerning the evolution of data such as retrieval of any specific version from the archive and querying the temporal history of any element. This is in contrast to diff-based approaches where such operations may require undoing a large number of changes or significant reasoning with the deltas. Surprisingly, our archiving technique does not incur any significant space overhead when contrasted with other approaches. Our experimental results support this and also show that the compacted archive file interacts well with other compression techniques. Finally, another useful property of our approach is that the resulting archive is also in XML and hence can directly leverage existing XML tools