Task-driven active sensing framework applied to leaf probing

© . This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/This article presents a new method for actively exploring a 3D workspace with the aim of localizing relevant regions for a given task. Our method encodes the exploration route in a multi-layer occupancy grid map. This map, together with a multiple-view estimator and a maximum-information-gain gathering approach, incrementally provide a better understanding of the scene until reaching the task termination criterion. This approach is designed to be applicable to any task entailing 3D object exploration where some previous knowledge of its approximate shape is available. Its suitability is demonstrated here for a leaf probing task using an eye-in-hand arm configuration in the context of a phenotyping application (leaf probing).Peer ReviewedPostprint (author's final draft

Soft Morphological Computation

Soft Robotics is a relatively new area of research, where progress in material science has powered the next generation of robots, exhibiting biological-like properties such as soft/elastic tissues, compliance, resilience and more besides. One of the issues when employing soft robotics technologies is the soft nature of the interactions arising between the robot and its environment. These interactions are complex, and the their dynamics are non-linear and hard to capture with known models. In this thesis we argue that complex soft interactions can actually be beneficial to the robot, and give rise to rich stimuli which can be used for the resolution of robot tasks. We further argue that the usefulness of these interactions depends on statistical regularities, or structure, that appear in the stimuli. To this end, robots should appropriately employ their morphology and their actions, to influence the system-environment interactions such that structure can arise in the stimuli. In this thesis we show that learning processes can be used to perform such a task. Following this rationale, this thesis proposes and supports the theory of Soft Morphological Computation (SoMComp), by which a soft robot should appropriately condition, or ‘affect’, the soft interactions to improve the quality of the physical stimuli arising from it. SoMComp is composed of four main principles, i.e.: Soft Proprioception, Soft Sensing, Soft Morphology and Soft Actuation. Each of these principles is explored in the context of haptic object recognition or object handling in soft robots. Finally, this thesis provides an overview of this research and its future directions.AHDB CP17

Task-oriented viewpoint planning for free-form objects

A thesis submitted to the Universitat Politècnica de Catalunya to obtain the degree of Doctor of Philosophy. Doctoral programme: Automatic Control, Robotics and Computer Vision. This thesis was completed at: Institut de Robòtica i Informàtica Industrial, CSIC-UPC.[EN]: This thesis deals with active sensing and its use in real exploration tasks under both scene ambiguities and measurement uncertainties. While object modeling is the implicit objective of most of active sensing algorithms, in this work we have explored new strategies to deal with more generic and more complex tasks. Active sensing requires the ability of moving the perceptual system to gather new information. Our approach uses a robot manipulator with a 3D Time-of-Flight (ToF) camera attached to the end-effector. For a complex task, we have focused our attention on plant phenotyping. Plants are complex objects, with leaves that change their position and size along time. Valid viewpoints for a certain plant are hardly valid for a different one, even belonging to the same species. Some instruments, such as chlorophyll meters or disk sampling tools, require being precisely positioned over a particular location of the leaf. Therefore, their use requires the modeling of specific regions of interest of the plant, including also the free space needed for avoiding obstacles and approaching the leaf with tool. It is easy to observe that predefined camera trajectories are not valid here, and that usually with one single view it is very difficult to acquire all the required information. The overall objective of this thesis is to solve complex active sensing tasks by embedding their exploratory goal into a pre-estimated geometrical model, using information-gain as the fundamental guideline for the reward function. The main contributions can be divided in two groups: first, the evaluation of ToF cameras and their calibration to assess the uncertainty of the measurements (presented in Part I); and second, the proposal of a framework capable of embedding the task, modeled as free and occupied space, and that takes into account the modeled sensor's uncertainty to improve the action selection algorithm (presented in Part II). This thesishas given rise to 14 publications, including 5 indexed journals, and its results have been used in the GARNICS European project. The complete framework is based on the Next-Best-View methodology and it can be summarized in the following main steps. First, an initial view of the object (e.g., a plant) is acquired. From this initial view and given a set of candidate viewpoints, the expected gain obtained by moving the robot and acquiring the next image is computed. This computation takes into account the uncertainty from all the different pixels of the sensor, the expected information based on a predefined task model, and the possible occlusions. Once the most promising view is selected, the robot moves, takes a new image, integrates this information intothe model, and evaluates again the set of remaining views. Finally, the task terminates when enough information is gathered. In our examples, this process enables the robot to perform a measurement on top of a leaf. The key ingredient is to model the complexity of the task in a layered representation of free-occupied occupancy grid maps. This allows to naturally encode the requirements of the task, to maintain and update the belief state with the measurements performed, to simulate and compute the expected gains of all potential viewpoints, and to encode the termination condition. During this work the technology of ToF cameras has incredibly evolved. Nowadays it is very popular and ToF cameras are already embedded in some consumer devices. Although the quality of the measurements has been considerably improved, it is still not uniform in the sensor. We believe, as it has been demonstrated in various experiments in this work, that a careful modeling of the sensor's uncertainty is highly beneficial and helps to design better decision systems. In our case, it enables a more realistic computation of the information gain measure, and consequently, a better selection criterion.[CA]: Aquesta tesi aborda el tema de la percepció activa i el seu ús en tasques d'exploració en entorns reals tot considerant la ambigüitat en l'escena i la incertesa del sistema de percepció. Al contrari de la majoria d'algoritmes de percepció activa, on el modelatge d'objectes sol ser l'objectiu implícit, en aquesta tesi hem explorat noves estratègies per poder tractar tasques genèriques i de major complexitat. Tot sistema de percepció activa requereix un aparell sensorial amb la capacitat de variar els seus paràmetres de forma controlada, per poder, d'aquesta manera, recopilar nova informació per resoldre una tasca determinada. En tasques d'exploració, la posició i orientació del sensor són paràmetres claus per resoldre la tasca. En el nostre estudi hem fet ús d'un robot manipulador com a sistema de posicionament i d'una càmera de profunditat de temps de vol (ToF), adherida al seu efector final, com a sistema de percepció. Com a tasca final, ens hem concentrat en l'adquisició de mesures sobre fulles dins de l'àmbit del fenotipatge de les plantes. Les plantes son objectes molt complexos, amb fulles que canvien de textura, posició i mida al llarg del temps. Això comporta diverses dificultats. Per una banda, abans de dur a terme una mesura sobre un fulla s'ha d'explorar l'entorn i trobar una regió que ho permeti. A més a més, aquells punts de vista que han estat adequats per una determinada planta difícilment ho seran per una altra, tot i sent les dues de la mateixa espècie. Per un altra banda, en el moment de la mesura, certs instruments, tals com els mesuradors de clorofil·la o les eines d'extracció de mostres, requereixen ser posicionats amb molta precisió. És necessari, doncs, disposar d'un model detallat d'aquestes regions d'interès, i que inclogui no només l'espai ocupat sinó també el lliure. Gràcies a la modelització de l'espai lliure es pot dur a terme una bona evitació d'obstacles i un bon càlcul de la trajectòria d'aproximació de l'eina a la fulla. En aquest context, és fàcil veure que, en general, amb un sol punt de vistano n'hi haprou per adquirir tota la informació necessària per prendre una mesura, i que l'ús de trajectòries predeterminades no garanteixen l'èxit. L'objectiu general d'aquesta tesi és resoldre tasques complexes de percepció activa mitjançant la codificació del seu objectiu d'exploració en un model geomètric prèviament estimat, fent servir el guany d'informació com a guia fonamental dins de la funció de cost. Les principals contribucions d'aquesta tesi es poden dividir en dos grups: primer, l'avaluació de les càmeres ToF i el seu calibratge per poder avaluar la incertesa de les seves mesures (presentat en la Part I); i en segon lloc, la proposta d'un sistema capaç de codificar la tasca mitjançant el modelatge de l'espai lliure i ocupat, i que té en compte la incertesa del sensor per millorar la selecció de les accions (presentat en la Part II). Aquesta tesi ha donat lloc a 14 publicacions, incloent 5 en revistes indexades, i els resultats obtinguts s'han fet servir en el projecte Europeu GARNICS. La funcionalitat del sistema complet està basada en els mètodes Next-Best-View (següent-millor-vista) i es pot desglossar en els següents passos principals. En primer lloc, s'obté una vista inicial de l'objecte (p. ex., una planta). A partir d'aquesta vista inicial i d'un conjunt de vistes candidates, s'estima, per cada una d'elles, el guany d'informació resultant, tant de moure la càmera com d'obtenir una nova mesura. És rellevant dir que aquest càlcul té en compte la incertesa de cada un dels píxels del sensor, l'estimació de la informació basada en el model de la tasca preestablerta i les possibles oclusions. Un cop seleccionada la vista més prometedora, el robot es mou a la nova posició, pren una nova imatge, integra aquesta informació en el model i torna a avaluar, un altre cop, el conjunt de punts de vista restants. Per últim, la tasca acaba en el moment que es recopila suficient informació.This work has been partially supported by a JAE fellowship of the Spanish Scientific Research Council (CSIC), the Spanish Ministry of Science and Innovation, the Catalan Research Commission and the European Commission under the research projects: DPI2008-06022: PAU: Percepción y acción ante incertidumbre. DPI2011-27510: PAU+: Perception and Action in Robotics Problems with Large State Spaces. 201350E102: MANIPlus: Manipulación robotizada de objetos deformables. 2009-SGR-155: SGR ROBÒTICA: Grup de recerca consolidat - Grup de Robòtica. FP6-2004-IST-4-27657: EU PACO PLUS project. FP7-ICT-2009-4-247947: GARNICS: Gardening with a cognitive system. FP7-ICT-2009-6-269959: IntellAct: Intelligent observation and execution of Actions and manipulations.Peer Reviewe

In Vivo Human-Like Robotic Phenotyping of Leaf and Stem Traits in Maize and Sorghum in Greenhouse

In plant phenotyping, the measurement of morphological, physiological and chemical traits of leaves and stems is needed to investigate and monitor the condition of plants. The manual measurement of these properties is time consuming, tedious, error prone, and laborious. The use of robots is a new approach to accomplish such endeavors, which enables automatic monitoring with minimal human intervention. In this study, two plant phenotyping robotic systems were developed to realize automated measurement of plant leaf properties and stem diameter which could reduce the tediousness of data collection compare to manual measurements. The robotic systems comprised of a four degree of freedom (DOF) robotic manipulator and a Time-of-Flight (TOF) camera. Robotic grippers were developed to integrate an optical fiber cable (coupled to a portable spectrometer) for leaf spectral reflectance measurement, a thermistor for leaf temperature measurement, and a linear potentiometer for stem diameter measurement. An Image processing technique and deep learning method were used to identify grasping points on leaves and stems, respectively. The systems were tested in a greenhouse using maize and sorghum plants. The results from the leaf phenotyping robot experiment showed that leaf temperature measurements by the phenotyping robot were correlated with those measured manually by a human researcher (R2 = 0.58 for maize and 0.63 for sorghum). The leaf spectral measurements by the phenotyping robot predicted leaf chlorophyll, water content and potassium with moderate success (R2 ranged from 0.52 to 0.61), whereas the prediction for leaf nitrogen and phosphorus were poor. The total execution time to grasp and take measurements from one leaf was 35.5±4.4 s for maize and 38.5±5.7 s for sorghum. Furthermore, the test showed that the grasping success rate was 78% for maize and 48% for sorghum. The experimental results from the stem phenotyping robot demonstrated a high correlation between the manual and automated stem diameter measurements (R2 \u3e 0.98). The execution time for stem diameter measurement was 45.3 s. The system could successfully detect and localize, and also grasp the stem for all plants during the experiment. Both robots could decrease the tediousness of collecting phenotypes compare to manual measurements. The phenotyping robots can be useful to complement the traditional image-based high-throughput plant phenotyping in greenhouses by collecting in vivo morphological, physiological, and biochemical trait measurements for plant leaves and stems. Advisors: Yufeng Ge, Santosh Pitl

Robotic Technologies for High-Throughput Plant Phenotyping: Contemporary Reviews and Future Perspectives

Phenotyping plants is an essential component of any effort to develop new crop varieties. As plant breeders seek to increase crop productivity and produce more food for the future, the amount of phenotype information they require will also increase. Traditional plant phenotyping relying on manual measurement is laborious, time-consuming, error-prone, and costly. Plant phenotyping robots have emerged as a high-throughput technology to measure morphological, chemical and physiological properties of large number of plants. Several robotic systems have been developed to fulfill different phenotyping missions. In particular, robotic phenotyping has the potential to enable efficient monitoring of changes in plant traits over time in both controlled environments and in the field. The operation of these robots can be challenging as a result of the dynamic nature of plants and the agricultural environments. Here we discuss developments in phenotyping robots, and the challenges which have been overcome and others which remain outstanding. In addition, some perspective applications of the phenotyping robots are also presented. We optimistically anticipate that autonomous and robotic systems will make great leaps forward in the next 10 years to advance the plant phenotyping research into a new era

Self-Supervised Learning for Invariant Representations From Multi-Spectral and SAR Images

Self-Supervised learning (SSL) has become the new state of the art in several domain classification and segmentation tasks. One popular category of SSL are distillation networks such as Bootstrap Your Own Latent (BYOL). This work proposes RS-BYOL, which builds on BYOL in the remote sensing (RS) domain where data are non-trivially different from natural RGB images. Since multi-spectral (MS) and synthetic aperture radar (SAR) sensors provide varied spectral and spatial resolution information, we utilise them as an implicit augmentation to learn invariant feature embeddings. In order to learn RS based invariant features with SSL, we trained RS-BYOL in two ways, i.e. single channel feature learning and three channel feature learning. This work explores the usefulness of single channel feature learning from random 10 MS bands of 10m-20 m resolution and VV-VH of SAR bands compared to the common notion of using three or more bands. In our linear probing evaluation, these single channel features reached a 0.92 F1 score on the EuroSAT classification task and 59.6 mIoU on the IEEE Data Fusion Contest (DFC) segmentation task for certain single bands. We also compare our results with ImageNet weights and show that the RS based SSL model outperforms the supervised ImageNet based model. We further explore the usefulness of multi-modal data compared to single modality data, and it is shown that utilising MS and SAR data allows better invariant representations to be learnt than utilising only MS data

High-throughput plant phenotyping: a role for metabolomics?

High-throughput (HTP) plant phenotyping approaches are developing rapidly and are already helping to bridge the genotype–phenotype gap. However, technologies should be developed beyond current physico-spectral evaluations to extend our analytical capacities to the subcellular level. Metabolites define and determine many key physiological and agronomic features in plants and an ability to integrate a metabolomics approach within current HTP phenotyping platforms has huge potential for added value. While key challenges remain on several fronts, novel technological innovations are upcoming yet under-exploited in a phenotyping context. In this review, we present an overview of the state of the art and how current limitations might be overcome to enable full integration of metabolomics approaches into a generic phenotyping pipeline in the near future.info:eu-repo/semantics/publishedVersio

Design and control of reconfigurable bed/chair system with body pressuring sensing

Thesis (M.S.)--Massachusetts Institute of Technology, Dept. of Mechanical Engineering, 1997.Includes bibliographical references (leaf 68).by Joseph S. Spano.M.S

Tactile Perception And Visuotactile Integration For Robotic Exploration

As the close perceptual sibling of vision, the sense of touch has historically received less than deserved attention in both human psychology and robotics. In robotics, this may be attributed to at least two reasons. First, it suffers from the vicious cycle of immature sensor technology, which causes industry demand to be low, and then there is even less incentive to make existing sensors in research labs easy to manufacture and marketable. Second, the situation stems from a fear of making contact with the environment, avoided in every way so that visually perceived states do not change before a carefully estimated and ballistically executed physical interaction. Fortunately, the latter viewpoint is starting to change. Work in interactive perception and contact-rich manipulation are on the rise. Good reasons are steering the manipulation and locomotion communities’ attention towards deliberate physical interaction with the environment prior to, during, and after a task. We approach the problem of perception prior to manipulation, using the sense of touch, for the purpose of understanding the surroundings of an autonomous robot. The overwhelming majority of work in perception for manipulation is based on vision. While vision is a fast and global modality, it is insufficient as the sole modality, especially in environments where the ambient light or the objects therein do not lend themselves to vision, such as in darkness, smoky or dusty rooms in search and rescue, underwater, transparent and reflective objects, and retrieving items inside a bag. Even in normal lighting conditions, during a manipulation task, the target object and fingers are usually occluded from view by the gripper. Moreover, vision-based grasp planners, typically trained in simulation, often make errors that cannot be foreseen until contact. As a step towards addressing these problems, we present first a global shape-based feature descriptor for object recognition using non-prehensile tactile probing alone. Then, we investigate in making the tactile modality, local and slow by nature, more efficient for the task by predicting the most cost-effective moves using active exploration. To combine the local and physical advantages of touch and the fast and global advantages of vision, we propose and evaluate a learning-based method for visuotactile integration for grasping