Unity in diversity : integrating differing linguistic data in TUSNELDA

This paper describes the creation and preparation of TUSNELDA, a collection of corpus data built for linguistic research. This collection contains a number of linguistically annotated corpora which differ in various aspects such as language, text sorts / data types, encoded annotation levels, and linguistic theories underlying the annotation. The paper focuses on this variation on the one hand and the way how these heterogeneous data are integrated into one resource on the other hand

Bilvideo-7: an MPEG-7- compatible video indexing and retrieval system

Cataloged from PDF version of article.BilVideo-7 is an MPEG-7-compatible, distributed, video indexing and retrieval system that supports complex multimodal queries in a unified framework

A Framework to Enable the Semantic Inferencing and Querying of Multimedia Content

Cultural institutions, broadcasting companies, academic, scientific and defence organisations are producing vast quantities of digital multimedia content. With this growth in audiovisual material comes the need for standardised representations encapsulating the rich semantic meaning required to enable the automatic filtering, machine processing, interpretation and assimilation of multimedia resources. Additionally generating high-level descriptions is difficult and manual creation is expensive although significant progress has been made in recent years on automatic segmentation and low-level feature recognition for multimedia. Within this paper we describe the application of semantic web technologies to enable the generation of high-level, domain-specific, semantic descriptions of multimedia content from low-level, automatically-extracted features. By applying the knowledge reasoning capabilities provided by ontologies and inferencing rules to large, multimedia data sets generated by scientific research communities, we hope to expedite solutions to the complex scientific problems they face

Field-Weighted XML Retrieval Based on BM25.

This is the first year for the Centre for Interactive Systems Research participation of INEX. Based on a newly developed XML indexing and retrieval system on Okapi, we extend Robertson’s field-weighted BM25F for document retrieval to element level retrieval function BM25E. In this paper, we introduce this new function and our experimental method in detail, and then show how we tuned weights for our selected fields by using INEX 2004 topics and assessments. Based on the tuned models we submitted our runs for CO.Thorough, CO.FetchBrowse, the methods we propose show real promise. Existing problems and future work are also discussed

Data integration, pathway analysis and mining for systems biology

Post-genomic molecular biology embodies high-throughput experimental techniques and hence is a data-rich field. The goal of this thesis is to develop bioinformatics methods to utilise publicly available data in order to produce knowledge and to aid mining of newly generated data. As an example of knowledge or hypothesis generation, consider function prediction of biological molecules. Assignment of protein function is a non-trivial task owing to the fact that the same protein may be involved in different biological processes, depending on the state of the biological system and protein localisation. The function of a gene or a gene product may be provided as a textual description in a gene or protein annotation database. Such textual descriptions lack in providing the contextual meaning of the gene function. Therefore, we need ways to represent the meaning in a formal way. Here we apply data integration approach to provide rich representation that enables context-sensitive mining of biological data in terms of integrated networks and conceptual spaces. Context-sensitive gene function annotation follows naturally from this framework, as a particular application. Next, knowledge that is already publicly available can be used to aid mining of new experimental data. We developed an integrative bioinformatics method that utilises publicly available knowledge of protein-protein interactions, metabolic networks and transcriptional regulatory networks to analyse transcriptomics data and predict altered biological processes. We applied this method to a study of dynamic response of Saccharomyces cerevisiae to oxidative stress. The application of our method revealed dynamically altered biological functions in response to oxidative stress, which were validated by comprehensive in vivo metabolomics experiments. The results provided in this thesis indicate that integration of heterogeneous biological data facilitates advanced mining of the data. The methods can be applied for gaining insight into functions of genes, gene products and other molecules, as well as for offering functional interpretation to transcriptomics and metabolomics experiments

Flexible and scalable digital library search

In this report the development of a specialised search engine for a digital library is described. The proposed system architecture consists of three levels: the conceptual, the logical and the physical level. The conceptual level schema enables by its exposure of a domain specific schema semantically rich conceptual search. The logical level provides a description language to achieve a high degree of flexibility for multimedia retrieval. The physical level takes care of scalable and efficient persistent data storage. The role, played by each level, changes during the various stages of a search engine's lifecycle: (1) modeling the index, (2) populating and maintaining the index and (3) querying the index. The integration of all this functionality allows the combination of both conceptual and content-based querying in the query stage. A search engine for the Australian Open tennis tournament website is used as a running example, which shows the power of the complete architecture and its various component

Alfanet Deliverable 4.2 Second System Prototype

This deliverable describes the functionality included in the second prototype. In order to situate to the reader, first the system architecture is shortly described. Based on the identified modules, the second prototype functionality is explained, in addition to the functions already provided for the first prototype. This document is intended for internal audience (users and developers).IST 2001 3328

A 3d geoscience information system framework

Two-dimensional geographical information systems are extensively used in the geosciences to create and analyse maps. However, these systems are unable to represent the Earth's subsurface in three spatial dimensions. The objective of this thesis is to overcome this deficiency, to provide a general framework for a 3d geoscience information system (GIS), and to contribute to the public discussion about the development of an infrastructure for geological observation data, geomodels, and geoservices. Following the objective, the requirements for a 3d GIS are analysed. According to the requirements, new geologically sensible query functionality for geometrical, topological and geological properties has been developed and the integration of 3d geological modeling and data management system components in a generic framework has been accomplished. The 3d geoscience information system framework presented here is characterized by the following features: - Storage of geological observation data and geomodels in a XML-database server. According to a new data model, geological observation data can be referenced by a set of geomodels. - Functionality for querying observation data and 3d geomodels based on their 3d geometrical, topological, material, and geological properties were developed and implemented as plug-in for a 3d geomodeling user application. - For database queries, the standard XML query language has been extended with 3d spatial operators. The spatial database query operations are computed using a XML application server which has been developed for this specific purpose. This technology allows sophisticated 3d spatial and geological database queries. Using the developed methods, queries can be answered like: "Select all sandstone horizons which are intersected by the set of faults F". This request contains a topological and a geological material parameter. The combination of queries with other GIS methods, like visual and statistical analysis, allows geoscience investigations in a novel 3d GIS environment. More generally, a 3d GIS enables geologists to read and understand a 3d digital geomodel analogously as they read a conventional 2d geological map