Mapping Functional Architecture in Neocortical Epileptic Networks

Epilepsy is a debilitating brain disorder that causes recurring seizures in approximately 60 million people worldwide. For the one-third of epilepsy patients whose seizures are refractory to medication, effective therapy relies on reliably localizing where seizures originate and spread. This clinical practice amounts to delineating the epileptic network through neural sensors recording the electrocorticogram. Mapping functional architecture in the epileptic network is promising for objectively localizing cortical targets for therapy in cases of neocortical refractory epilepsy, where post-surgical seizure freedom is unfavorable when cortical structures responsible for generating seizures are difficult to delineate. In this work, we develop and apply network models for analyzing and interrogating the role of fine-grain functional architecture during epileptic events in human neocortical networks. We first develop and validate a model for objectively identifying regions of the epileptic network that drive seizure dynamics. We then develop and validate a model for disentangling network pathways traversed during ``normal\u27\u27 function from pathways that drive seizures. Lastly, we devise and apply a novel platform for predicting network response to targeted lesioning of neocortical structures, revealing key control areas that influence the spread of seizures to broader network regions. The outcomes of this work demonstrate network models can objectively identify and predict targets for treating neocortical epilepsy, blueprint potential control strategies to limit seizure spread, and are poised for further validation prior to near-term clinical translation

Shared inputs, entrainment, and desynchrony in elliptic bursters: from slow passage to discontinuous circle maps

What input signals will lead to synchrony vs. desynchrony in a group of biological oscillators? This question connects with both classical dynamical systems analyses of entrainment and phase locking and with emerging studies of stimulation patterns for controlling neural network activity. Here, we focus on the response of a population of uncoupled, elliptically bursting neurons to a common pulsatile input. We extend a phase reduction from the literature to capture inputs of varied strength, leading to a circle map with discontinuities of various orders. In a combined analytical and numerical approach, we apply our results to both a normal form model for elliptic bursting and to a biophysically-based neuron model from the basal ganglia. We find that, depending on the period and amplitude of inputs, the response can either appear chaotic (with provably positive Lyaponov exponent for the associated circle maps), or periodic with a broad range of phase-locked periods. Throughout, we discuss the critical underlying mechanisms, including slow-passage effects through Hopf bifurcation, the role and origin of discontinuities, and the impact of noiseComment: 17 figures, 40 page

A Novel Interhemispheric Interaction: Modulation of Neuronal Cooperativity in the Visual Areas

Background: The cortical representation of the visual field is split along the vertical midline, with the left and the right hemi-fields projecting to separate hemispheres. Connections between the visual areas of the two hemispheres are abundant near the representation of the visual midline. It was suggested that they re-establish the functional continuity of the visual field by controlling the dynamics of the responses in the two hemispheres. Methods/Principal Findings: To understand if and how the interactions between the two hemispheres participate in processing visual stimuli, the synchronization of responses to identical or different moving gratings in the two hemi-fields were studied in anesthetized ferrets. The responses were recorded by multiple electrodes in the primary visual areas and the synchronization of local field potentials across the electrodes were analyzed with a recent method derived from dynamical system theory. Inactivating the visual areas of one hemisphere modulated the synchronization of the stimulus-driven activity in the other hemisphere. The modulation was stimulus-specific and was consistent with the fine morphology of callosal axons in particular with the spatio-temporal pattern of activity that axonal geometry can generate. Conclusions/Significance: These findings describe a new kind of interaction between the cerebral hemispheres and highlight the role of axonal geometry in modulating aspects of cortical dynamics responsible for stimulus detection and/or categorization

Phase synchrony facilitates binding and segmentation of natural images in a coupled neural oscillator network

Synchronization has been suggested as a mechanism of binding distributed feature representations facilitating segmentation of visual stimuli. Here we investigate this concept based on unsupervised learning using natural visual stimuli. We simulate dual-variable neural oscillators with separate activation and phase variables. The binding of a set of neurons is coded by synchronized phase variables. The network of tangential synchronizing connections learned from the induced activations exhibits small-world properties and allows binding even over larger distances. We evaluate the resulting dynamic phase maps using segmentation masks labeled by human experts. Our simulation results show a continuously increasing phase synchrony between neurons within the labeled segmentation masks. The evaluation of the network dynamics shows that the synchrony between network nodes establishes a relational coding of the natural image inputs. This demonstrates that the concept of binding by synchrony is applicable in the context of unsupervised learning using natural visual stimuli

<p>Pattern Formation in Coupled Networks with Inhibition and Gap Junctions</p>

In this dissertation we analyze networks of coupled phase oscillators. We consider systems where long range chemical coupling and short range electrical coupling have opposite effects on the synchronization process. We look at the existence and stability of three patterns of activity: synchrony, clustered state and asynchrony. In Chapter 1, we develop a minimal phase model using experimental results for the olfactory system of Limax. We study the synchronous solution as the strength of synaptic coupling increases. We explain the emergence of traveling waves in the system without a frequency gradient. We construct the normal form for the pitchfork bifurcation and compare our analytical results with numerical simulations. In Chapter 2, we study a mean-field coupled network of phase oscillators for which a stable two-cluster solution exists. The addition of nearest neighbor gap junction coupling destroys the stability of the cluster solution. When the gap junction coupling is strong there is a series of traveling wave solutions depending on the size of the network. We see bistability in the system between clustered state, periodic solutions and traveling waves. The bistability properties also change with the network size. We analyze the system numerically and analytically. In Chapter 3, we turn our attention to a very popular model about network synchronization. We represent the Kuramoto model in its original form and calculate the main results using a different technique. We also look at a modified version and study how this effects synchronization. We consider a collection of oscillators organized in m groups. The addition of gap junctions creates a wave like behavior

Network Dynamics Mediate Circadian Clock Plasticity

A circadian clock governs most aspects of mammalian behavior. Although its properties are in part genetically determined, altered light-dark environment can change circadian period length through a mechanism requiring de novo DNA methylation. We show here that this mechanism is mediated not via cell-autonomous clock properties, but rather through altered networking within the suprachiasmatic nuclei (SCN), the circadian “master clock,” which is DNA methylated in region-specific manner. DNA methylation is necessary to temporally reorganize circadian phasing among SCN neurons, which in turn changes the period length of the network as a whole. Interruption of neural communication by inhibiting neuronal firing or by physical cutting suppresses both SCN reorganization and period changes. Mathematical modeling suggests, and experiments confirm, that this SCN reorganization depends upon GABAergic signaling. Our results therefore show that basic circadian clock properties are governed by dynamic interactions among SCN neurons, with neuroadaptations in network function driven by the environment

Effects of demographic noise on the synchronization of a metapopulation in a fluctuating environment

We use the theory of noise-induced phase synchronization to analyze the effects of demographic noise on the synchronization of a metapopulation of predator-prey systems within a fluctuating environment (Moran effect). Treating each local predator–prey population as a stochastic urn model, we derive a Langevin equation for the stochastic dynamics of the metapopulation. Assuming each local population acts as a limit cycle oscillator in the deterministic limit, we use phase reduction and averaging methods to derive the steady state probability density for pairwise phase differences between oscillators, which is then used to determine the degree of synchronization of\ud the metapopulation

Model-Based and Machine Learning-Based Control of Biological Oscillators

Nonlinear oscillators - dynamical systems with stable periodic orbits - arise in many systems of physical, technological, and biological interest. This dissertation investigates the dynamics of such oscillators arising in biology, and develops several control algorithms to modify their collective behavior. We demonstrate that these control algorithms have potential in devising treatments for Parkinson's disease, cardiac alternans, and jet lag. Phase reduction, a classical reduction technique, has been instrumental in understanding such biological oscillators. In this dissertation, we investigate a new reduction technique called augmented phase reduction, and calculate its associated analytical expressions for six dynamically different planar systems: This helps us to understand the dynamical regimes for which the use of augmented phase reduction is advantageous over the standard phase reduction. We further this study by developing a novel optimal control algorithm based on the augmented phase reduction to change the phase of a single oscillator using a minimum energy input. We show that our control algorithm is effective even when a large phase change is required or when the nontrivial Floquet multiplier of the oscillator is close to unity; in such cases, the previously proposed control algorithm based on the standard phase reduction fails.We then devise a novel framework to control a population of biological oscillators as a whole, and change their collective behavior. Our first two control algorithms are Lyapunov-based, and our third is an optimal control algorithm which minimizes the control energy consumption while achieving the desired collective behavior of an oscillator population. We show that the developed control algorithms can synchronize, desynchronize, cluster, and phase shift the population.We continue this investigation by developing two novel machine learning control algorithms, which have a simple and intelligent structure that makes them effective even with a sparse data set. We show that these algorithms are powerful enough to control a wide variety of dynamical systems and not just biological oscillators. We conclude this study by understanding how the developed machine learning algorithms work in terms of phase reduction.In this dissertation, we have developed all these algorithms with the goal of ease of experimental implementation, for which the model parameters/training data can be measured experimentally. We close the loop on this dissertation by carrying out robustness analysis for the developed algorithms; demonstrating their resilience to noise, and thus their suitability for controlling living biological tissue. They truly hold great potential in devising treatments for Parkinson's disease, cardiac alternans, and jet lag

Synchronization of Coupled and Periodically Forced Chemical Oscillators

Physiological rhythms are essential in all living organisms. Such rhythms are regulated through the interactions of many cells. Deviation of a biological system from its normal rhythms can lead to physiological maladies. The tremor and symptoms associated with Parkinson\u27s disease are thought to emerge from abnormal synchrony of neuronal activity within the neural network of the brain. Deep brain stimulation is a therapeutic technique that can remove this pathological synchronization by the application of a periodic desynchronizing signal. Herein, we used the photosensitive Belousov--Zhabotinsky (BZ) chemical reaction to test the mechanism of deep brain stimulation. A collection of oscillators are initially synchronized using a regular light signal. Desynchronization is then attempted using an appropriately chosen desynchronizing signal based on information found in the phase response curve.;Coupled oscillators in various network topologies form the most common prototypical systems for studying networks of dynamical elements. In the present study, we couple discrete BZ photochemical oscillators in a network configuration. Different behaviors are observed on varying the coupling strength and the frequency heterogeneity, including incoherent oscillations to partial and full frequency entrainment. Phase clusters are organized symmetrically or non-symmetrically in phase-lag synchronization structures, a novel phase wave entrainment behavior in non-continuous media. The behavior is observed over a range of moderate coupling strengths and a broad frequency distribution of the oscillators