A Forward Reachability Algorithm for Bounded Timed-Arc Petri Nets

Timed-arc Petri nets (TAPN) are a well-known time extension of the Petri net model and several translations to networks of timed automata have been proposed for this model. We present a direct, DBM-based algorithm for forward reachability analysis of bounded TAPNs extended with transport arcs, inhibitor arcs and age invariants. We also give a complete proof of its correctness, including reduction techniques based on symmetries and extrapolation. Finally, we augment the algorithm with a novel state-space reduction technique introducing a monotonic ordering on markings and prove its soundness even in the presence of monotonicity-breaking features like age invariants and inhibitor arcs. We implement the algorithm within the model-checker TAPAAL and the experimental results document an encouraging performance compared to verification approaches that translate TAPN models to UPPAAL timed automata.Comment: In Proceedings SSV 2012, arXiv:1211.587

Petri nets for systems and synthetic biology

We give a description of a Petri net-based framework for modelling and analysing biochemical pathways, which uni¯es the qualita- tive, stochastic and continuous paradigms. Each perspective adds its con- tribution to the understanding of the system, thus the three approaches do not compete, but complement each other. We illustrate our approach by applying it to an extended model of the three stage cascade, which forms the core of the ERK signal transduction pathway. Consequently our focus is on transient behaviour analysis. We demonstrate how quali- tative descriptions are abstractions over stochastic or continuous descrip- tions, and show that the stochastic and continuous models approximate each other. Although our framework is based on Petri nets, it can be applied more widely to other formalisms which are used to model and analyse biochemical networks

Model-based dependability analysis : state-of-the-art, challenges and future outlook

Abstract: Over the past two decades, the study of model-based dependability analysis has gathered significant research interest. Different approaches have been developed to automate and address various limitations of classical dependability techniques to contend with the increasing complexity and challenges of modern safety-critical system. Two leading paradigms have emerged, one which constructs predictive system failure models from component failure models compositionally using the topology of the system. The other utilizes design models - typically state automata - to explore system behaviour through fault injection. This paper reviews a number of prominent techniques under these two paradigms, and provides an insight into their working mechanism, applicability, strengths and challenges, as well as recent developments within these fields. We also discuss the emerging trends on integrated approaches and advanced analysis capabilities. Lastly, we outline the future outlook for model-based dependability analysis

Model Checking Linear Logic Specifications

The overall goal of this paper is to investigate the theoretical foundations of algorithmic verification techniques for first order linear logic specifications. The fragment of linear logic we consider in this paper is based on the linear logic programming language called LO enriched with universally quantified goal formulas. Although LO was originally introduced as a theoretical foundation for extensions of logic programming languages, it can also be viewed as a very general language to specify a wide range of infinite-state concurrent systems. Our approach is based on the relation between backward reachability and provability highlighted in our previous work on propositional LO programs. Following this line of research, we define here a general framework for the bottom-up evaluation of first order linear logic specifications. The evaluation procedure is based on an effective fixpoint operator working on a symbolic representation of infinite collections of first order linear logic formulas. The theory of well quasi-orderings can be used to provide sufficient conditions for the termination of the evaluation of non trivial fragments of first order linear logic.Comment: 53 pages, 12 figures "Under consideration for publication in Theory and Practice of Logic Programming

Socionic Multi-Agent Systems Based on Reflexive Petri Nets and Theories of Social Self-Organisation

This contribution summarises the core results of the transdisciplinary ASKO project, part of the German DFG's programme Sozionik, which combines sociologists' and computer scientists' skills in order to create improved theories and models of artificial societies. Our research group has (a) formulated a social theory, which is able to explain fundamental mechanisms of self-organisation in both natural and artificial societies, (b) modelled this in a mathematical way using a visual formalism, and (c) developed a novel multi-agent system architecture which is conceptually coherent, recursively structured (hence non-eclectic) and based on our social theory. The article presents an outline of both a sociological middle-range theory of social self-organisation in educational institutions, its formal, Petri net based model, including a simulation of one of its main mechanisms, and the multi-agent system architecture SONAR. It describes how the theory was created by a re-analysis of some grand social theories, by grounding it empirically, and finally how the theory was evaluated by modelling its concepts and statements.Multi-Agents Systems, Petri Nets, Self-Organisation, Social Theories

Proceedings of SUMo and CompoNet 2011

International audienc

Symbolic Reachability Analysis of B through ProB and LTSmin

We present a symbolic reachability analysis approach for B that can provide a significant speedup over traditional explicit state model checking. The symbolic analysis is implemented by linking ProB to LTSmin, a high-performance language independent model checker. The link is achieved via LTSmin's PINS interface, allowing ProB to benefit from LTSmin's analysis algorithms, while only writing a few hundred lines of glue-code, along with a bridge between ProB and C using ZeroMQ. ProB supports model checking of several formal specification languages such as B, Event-B, Z and TLA. Our experiments are based on a wide variety of B-Method and Event-B models to demonstrate the efficiency of the new link. Among the tested categories are state space generation and deadlock detection; but action detection and invariant checking are also feasible in principle. In many cases we observe speedups of several orders of magnitude. We also compare the results with other approaches for improving model checking, such as partial order reduction or symmetry reduction. We thus provide a new scalable, symbolic analysis algorithm for the B-Method and Event-B, along with a platform to integrate other model checking improvements via LTSmin in the future

Equivalence-Checking on Infinite-State Systems: Techniques and Results

The paper presents a selection of recently developed and/or used techniques for equivalence-checking on infinite-state systems, and an up-to-date overview of existing results (as of September 2004)

Automata-theoretic and bounded model checking for linear temporal logic

In this work we study methods for model checking the temporal logic LTL. The focus is on the automata-theoretic approach to model checking and bounded model checking. We begin by examining automata-theoretic methods to model check LTL safety properties. The model checking problem can be reduced to checking whether the language of a finite state automaton on finite words is empty. We describe an efficient algorithm for generating small finite state automata for so called non-pathological safety properties. The presented implementation is the first tool able to decide whether a formula is non-pathological. The experimental results show that treating safety properties can benefit model checking at very little cost. In addition, we find supporting evidence for the view that minimising the automaton representing the property does not always lead to a small product state space. A deterministic property automaton can result in a smaller product state space even though it might have a larger number states. Next we investigate modular analysis. Modular analysis is a state space reduction method for modular Petri nets. The method can be used to construct a reduced state space called the synchronisation graph. We devise an on-the-fly automata-theoretic method for model checking the behaviour of a modular Petri net from the synchronisation graph. The solution is based on reducing the model checking problem to an instance of verification with testers. We analyse the tester verification problem and present an efficient on-the-fly algorithm, the first complete solution to tester verification problem, based on generalised nested depth-first search. We have also studied propositional encodings for bounded model checking LTL. A new simple linear sized encoding is developed and experimentally evaluated. The implementation in the NuSMV2 model checker is competitive with previously presented encodings. We show how to generalise the LTL encoding to a more succint logic: LTL with past operators. The generalised encoding compares favourably with previous encodings for LTL with past operators. Links between bounded model checking and the automata-theoretic approach are also explored.reviewe

An Effective Fixpoint Semantics for Linear Logic Programs

In this paper we investigate the theoretical foundation of a new bottom-up semantics for linear logic programs, and more precisely for the fragment of LinLog that consists of the language LO enriched with the constant 1. We use constraints to symbolically and finitely represent possibly infinite collections of provable goals. We define a fixpoint semantics based on a new operator in the style of Tp working over constraints. An application of the fixpoint operator can be computed algorithmically. As sufficient conditions for termination, we show that the fixpoint computation is guaranteed to converge for propositional LO. To our knowledge, this is the first attempt to define an effective fixpoint semantics for linear logic programs. As an application of our framework, we also present a formal investigation of the relations between LO and Disjunctive Logic Programming. Using an approach based on abstract interpretation, we show that DLP fixpoint semantics can be viewed as an abstraction of our semantics for LO. We prove that the resulting abstraction is correct and complete for an interesting class of LO programs encoding Petri Nets.Comment: 39 pages, 5 figures. To appear in Theory and Practice of Logic Programmin