Succinct Representations for Abstract Interpretation

Abstract interpretation techniques can be made more precise by distinguishing paths inside loops, at the expense of possibly exponential complexity. SMT-solving techniques and sparse representations of paths and sets of paths avoid this pitfall. We improve previously proposed techniques for guided static analysis and the generation of disjunctive invariants by combining them with techniques for succinct representations of paths and symbolic representations for transitions based on static single assignment. Because of the non-monotonicity of the results of abstract interpretation with widening operators, it is difficult to conclude that some abstraction is more precise than another based on theoretical local precision results. We thus conducted extensive comparisons between our new techniques and previous ones, on a variety of open-source packages.Comment: Static analysis symposium (SAS), Deauville : France (2012

Representing a P-complete problem by small trellis automata

A restricted case of the Circuit Value Problem known as the Sequential NOR Circuit Value Problem was recently used to obtain very succinct examples of conjunctive grammars, Boolean grammars and language equations representing P-complete languages (Okhotin, http://dx.doi.org/10.1007/978-3-540-74593-8_23 "A simple P-complete problem and its representations by language equations", MCU 2007). In this paper, a new encoding of the same problem is proposed, and a trellis automaton (one-way real-time cellular automaton) with 11 states solving this problem is constructed

Simple and Efficient Fully-Functional Succinct Trees

The fully-functional succinct tree representation of Navarro and Sadakane (ACM Transactions on Algorithms, 2014) supports a large number of operations in constant time using $2n+o(n)$ bits. However, the full idea is hard to implement. Only a simplified version with $O(\log n)$ operation time has been implemented and shown to be practical and competitive. We describe a new variant of the original idea that is much simpler to implement and has worst-case time $O(\log\log n)$ for the operations. An implementation based on this version is experimentally shown to be superior to existing implementations

Factorised Representations of Query Results

Query tractability has been traditionally defined as a function of input database and query sizes, or of both input and output sizes, where the query result is represented as a bag of tuples. In this report, we introduce a framework that allows to investigate tractability beyond this setting. The key insight is that, although the cardinality of a query result can be exponential, its structure can be very regular and thus factorisable into a nested representation whose size is only polynomial in the size of both the input database and query. For a given query result, there may be several equivalent representations, and we quantify the regularity of the result by its readability, which is the minimum over all its representations of the maximum number of occurrences of any tuple in that representation. We give a characterisation of select-project-join queries based on the bounds on readability of their results for any input database. We complement it with an algorithm that can find asymptotically optimal upper bounds and corresponding factorised representations.Comment: 44 pages, 13 figure

Prospects and limitations of full-text index structures in genome analysis

The combination of incessant advances in sequencing technology producing large amounts of data and innovative bioinformatics approaches, designed to cope with this data flood, has led to new interesting results in the life sciences. Given the magnitude of sequence data to be processed, many bioinformatics tools rely on efficient solutions to a variety of complex string problems. These solutions include fast heuristic algorithms and advanced data structures, generally referred to as index structures. Although the importance of index structures is generally known to the bioinformatics community, the design and potency of these data structures, as well as their properties and limitations, are less understood. Moreover, the last decade has seen a boom in the number of variant index structures featuring complex and diverse memory-time trade-offs. This article brings a comprehensive state-of-the-art overview of the most popular index structures and their recently developed variants. Their features, interrelationships, the trade-offs they impose, but also their practical limitations, are explained and compared

Boundaries, defects and Frobenius algebras

The interpretation of D-branes in terms of open strings has lead to much interest in boundary conditions of two-dimensional conformal field theories (CFTs). These studies have deepened our understanding of CFT and allowed us to develop new computational tools. The construction of CFT correlators based on combining tools from topological field theory and non-commutative algebra in tensor categories, which we summarize in this contribution, allows e.g. to discuss, apart from boundary conditions, also defect lines and disorder fields.Comment: 7 pages. Contribution to the 35th International Symposium Ahrenshoop on the Theory of Elementary Particles (Berlin, August 2002) and to the International Conference on Theoretical Physics (UNESCO, Paris, July 2002). For related proceedings contributions see http://tpe.physik.rwth-aachen.de/schweigert/proceedings.htm