Subset feedback vertex set is fixed parameter tractable

The classical Feedback Vertex Set problem asks, for a given undirected graph G and an integer k, to find a set of at most k vertices that hits all the cycles in the graph G. Feedback Vertex Set has attracted a large amount of research in the parameterized setting, and subsequent kernelization and fixed-parameter algorithms have been a rich source of ideas in the field. In this paper we consider a more general and difficult version of the problem, named Subset Feedback Vertex Set (SUBSET-FVS in short) where an instance comes additionally with a set S ? V of vertices, and we ask for a set of at most k vertices that hits all simple cycles passing through S. Because of its applications in circuit testing and genetic linkage analysis SUBSET-FVS was studied from the approximation algorithms perspective by Even et al. [SICOMP'00, SIDMA'00]. The question whether the SUBSET-FVS problem is fixed-parameter tractable was posed independently by Kawarabayashi and Saurabh in 2009. We answer this question affirmatively. We begin by showing that this problem is fixed-parameter tractable when parametrized by |S|. Next we present an algorithm which reduces the given instance to 2^k n^O(1) instances with the size of S bounded by O(k^3), using kernelization techniques such as the 2-Expansion Lemma, Menger's theorem and Gallai's theorem. These two facts allow us to give a 2^O(k log k) n^O(1) time algorithm solving the Subset Feedback Vertex Set problem, proving that it is indeed fixed-parameter tractable.Comment: full version of a paper presented at ICALP'1

Directed Subset Feedback Vertex Set Is Fixed-Parameter Tractable

Given a graph $G$ and an integer $k$, the Feedback Vertex Set (FVS) problem asks if there is a vertex set $T$ of size at most $k$ that hits all cycles in the graph. The fixed-parameter tractability status of FVS in directed graphs was a long-standing open problem until Chen et al. (STOC '08) showed that it is FPT by giving a $4^{k}k!n^{O(1)}$ time algorithm. In the subset versions of this problems, we are given an additional subset $S$ of vertices (resp., edges) and we want to hit all cycles passing through a vertex of $S$ (resp. an edge of $S$). Recently, the Subset Feedback Vertex Set in undirected graphs was shown to be FPT by Cygan et al. (ICALP '11) and independently by Kakimura et al. (SODA '12). We generalize the result of Chen et al. (STOC '08) by showing that Subset Feedback Vertex Set in directed graphs can be solved in time $2^{O(k^3)}n^{O(1)}$. By our result, we complete the picture for feedback vertex set problems and their subset versions in undirected and directed graphs. Besides proving the fixed-parameter tractability of Directed Subset Feedback Vertex Set, we reformulate the random sampling of important separators technique in an abstract way that can be used for a general family of transversal problems. Moreover, we modify the probability distribution used in the technique to achieve better running time; in particular, this gives an improvement from $2^{2^{O(k)}}$ to $2^{O(k^2)}$ in the parameter dependence of the Directed Multiway Cut algorithm of Chitnis et al. (SODA '12).Comment: To appear in ACM Transactions on Algorithms. A preliminary version appeared in ICALP '12. We would like to thank Marcin Pilipczuk for pointing out a missing case in the conference version which has been considered in this version. Also, we give an single exponential FPT algorithm improving on the double exponential algorithm from the conference versio

A randomized polynomial kernel for Subset Feedback Vertex Set

The Subset Feedback Vertex Set problem generalizes the classical Feedback Vertex Set problem and asks, for a given undirected graph $G=(V,E)$, a set $S \subseteq V$, and an integer $k$, whether there exists a set $X$ of at most $k$ vertices such that no cycle in $G-X$ contains a vertex of $S$. It was independently shown by Cygan et al. (ICALP '11, SIDMA '13) and Kawarabayashi and Kobayashi (JCTB '12) that Subset Feedback Vertex Set is fixed-parameter tractable for parameter $k$. Cygan et al. asked whether the problem also admits a polynomial kernelization. We answer the question of Cygan et al. positively by giving a randomized polynomial kernelization for the equivalent version where $S$ is a set of edges. In a first step we show that Edge Subset Feedback Vertex Set has a randomized polynomial kernel parameterized by $|S|+k$ with $O(|S|^2k)$ vertices. For this we use the matroid-based tools of Kratsch and Wahlstr\"om (FOCS '12) that for example were used to obtain a polynomial kernel for $s$-Multiway Cut. Next we present a preprocessing that reduces the given instance $(G,S,k)$ to an equivalent instance $(G',S',k')$ where the size of $S'$ is bounded by $O(k^4)$. These two results lead to a polynomial kernel for Subset Feedback Vertex Set with $O(k^9)$ vertices

Structural Parameterizations of Feedback Vertex Set

A feedback vertex set in an undirected graph is a subset of vertices whose removal results in an acyclic graph. It is well-known that the problem of finding a minimum sized (or k sized in case of decision version of) feedback vertex set (FVS) is polynomial time solvable in (sub)-cubic graphs, in pseudo-forests (graphs where each component has at most one cycle) and mock-forests (graph where each vertex is part of at most one cycle). In general graphs, it is known that the problem is NP-Complete, and has an O*((3.619)^k) fixed-parameter algorithm and an O(k^2) kernel where k, the solution size is the parameter. We consider the parameterized and kernelization complexity of feedback vertex set where the parameter is the size of some structure of the input. In particular, we show that * FVS is fixed-parameter tractable, but is unlikely to have polynomial sized kernel when parameterized by the number of vertices of the graph whose degree is at least 4. This answers a question asked in an earlier paper. * When parameterized by k, the number of vertices, whose deletion results in a pseudo-forest, we give an O(k^6) vertices kernel improving from the previously known O(k^{10}) bound. * When parameterized by the number k of vertices, whose deletion results in a mock-d-forest, we give a kernel consisting of O(k^{3d+3}) vertices and prove a lower bound of Omega(k^{d+2}) vertices (under complexity theoretic assumptions). Mock-d-forest for a constant d is a mock-forest where each component has at most d cycles

Search-Space Reduction via Essential Vertices

We investigate preprocessing for vertex-subset problems on graphs. While the notion of kernelization, originating in parameterized complexity theory, is a formalization of provably effective preprocessing aimed at reducing the total instance size, our focus is on finding a non-empty vertex set that belongs to an optimal solution. This decreases the size of the remaining part of the solution which still has to be found, and therefore shrinks the search space of fixed-parameter tractable algorithms for parameterizations based on the solution size. We introduce the notion of a c-essential vertex as one that is contained in all c-approximate solutions. For several classic combinatorial problems such as Odd Cycle Transversal and Directed Feedback Vertex Set, we show that under mild conditions a polynomial-time preprocessing algorithm can find a subset of an optimal solution that contains all 2-essential vertices, by exploiting packing/covering duality. This leads to FPT algorithms to solve these problems where the exponential term in the running time depends only on the number of non-essential vertices in the solution

Covering Small Independent Sets and Separators with Applications to Parameterized Algorithms

We present two new combinatorial tools for the design of parameterized algorithms. The first is a simple linear time randomized algorithm that given as input a $d$-degenerate graph $G$ and an integer $k$, outputs an independent set $Y$, such that for every independent set $X$ in $G$ of size at most $k$, the probability that $X$ is a subset of $Y$ is at least $\left({(d+1)k \choose k} \cdot k(d+1)\right)^{-1}$.The second is a new (deterministic) polynomial time graph sparsification procedure that given a graph $G$, a set $T = \{\{s_1, t_1\}, \{s_2, t_2\}, \ldots, \{s_\ell, t_\ell\}\}$ of terminal pairs and an integer $k$, returns an induced subgraph $G^\star$ of $G$ that maintains all the inclusion minimal multicuts of $G$ of size at most $k$, and does not contain any $(k+2)$-vertex connected set of size $2^{{\cal O}(k)}$. In particular, $G^\star$ excludes a clique of size $2^{{\cal O}(k)}$ as a topological minor. Put together, our new tools yield new randomized fixed parameter tractable (FPT) algorithms for Stable $s$-$t$ Separator, Stable Odd Cycle Transversal and Stable Multicut on general graphs, and for Stable Directed Feedback Vertex Set on $d$-degenerate graphs, resolving two problems left open by Marx et al. [ACM Transactions on Algorithms, 2013]. All of our algorithms can be derandomized at the cost of a small overhead in the running time.Comment: 35 page