422 research outputs found
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Unsupervised Medical Image Translation with Adversarial Diffusion Models
Imputation of missing images via source-to-target modality translation can
improve diversity in medical imaging protocols. A pervasive approach for
synthesizing target images involves one-shot mapping through generative
adversarial networks (GAN). Yet, GAN models that implicitly characterize the
image distribution can suffer from limited sample fidelity. Here, we propose a
novel method based on adversarial diffusion modeling, SynDiff, for improved
performance in medical image translation. To capture a direct correlate of the
image distribution, SynDiff leverages a conditional diffusion process that
progressively maps noise and source images onto the target image. For fast and
accurate image sampling during inference, large diffusion steps are taken with
adversarial projections in the reverse diffusion direction. To enable training
on unpaired datasets, a cycle-consistent architecture is devised with coupled
diffusive and non-diffusive modules that bilaterally translate between two
modalities. Extensive assessments are reported on the utility of SynDiff
against competing GAN and diffusion models in multi-contrast MRI and MRI-CT
translation. Our demonstrations indicate that SynDiff offers quantitatively and
qualitatively superior performance against competing baselines.Comment: M. Ozbey and O. Dalmaz contributed equally to this stud
Patch-based segmentation with spatial context for medical image analysis
Accurate segmentations in medical imaging form a crucial role in many applications from pa-
tient diagnosis to population studies. As the amount of data generated from medical images
increases, the ability to perform this task without human intervention becomes ever more de-
sirable. One approach, known broadly as atlas-based segmentation, is to propagate labels from
images which have already been manually labelled by clinical experts. Methods using this ap-
proach have been shown to be e ective in many applications, demonstrating great potential for
automatic labelling of large datasets. However, these methods usually require the use of image
registration and are dependent on the outcome of the registration. Any registrations errors
that occur are also propagated to the segmentation process and are likely to have an adverse
e ect on segmentation accuracy. Recently, patch-based methods have been shown to allow a
relaxation of the required image alignment, whilst achieving similar results. In general, these
methods label each voxel of a target image by comparing the image patch centred on the voxel
with neighbouring patches from an atlas library and assigning the most likely label according
to the closest matches. The main contributions of this thesis focuses around this approach
in providing accurate segmentation results whilst minimising the dependency on registration
quality. In particular, this thesis proposes a novel kNN patch-based segmentation framework,
which utilises both intensity and spatial information, and explore the use of spatial context in
a diverse range of applications. The proposed methods extend the potential for patch-based
segmentation to tolerate registration errors by rede ning the \locality" for patch selection and
comparison, whilst also allowing similar looking patches from di erent anatomical structures
to be di erentiated. The methods are evaluated on a wide variety of image datasets, ranging
from the brain to the knees, demonstrating its potential with results which are competitive to
state-of-the-art techniques.Open Acces
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