Superficieibacter electus gen. nov., sp. nov., an extended-spectrum β-lactamase possessing member of the enterobacteriaceae family, isolated from Intensive Care Unit surfaces

<p>Two Gram-negative bacilli strains, designated BP-1(T) and BP-2, were recovered from two different Intensive Care Unit surfaces during a longitudinal survey in Pakistan. Both strains were unidentified using the bioMerieux VITEK MS IVD v2.3.3 and Bruker BioTyper MALDI-TOF mass spectrometry platforms. To more precisely determine the taxonomic identity of BP-1(T) and BP-2, we employed a biochemical and phylogenomic approach. The 16S rRNA gene sequence of strain BP-1(T) had the highest identity to Citrobacter farmeri CDC 2991-81(T) (98.63%) Citrobacter amalonaticus CECT 863(T) (98.56%), Citrobacter sedlakii NBRC 105722(T) (97.74%) and Citrobacter rodentium NBRC 105723(T) (97.74%). The biochemical utilization scheme of BP-1(T) using the Analytic Profile Index for Enterobacteriaceae (API20E) indicated its enzymatic functions are unique within the Enterobacteriaceae but most closely resemble Kluyvera spp., Enterobacter cloacae and Citrobacter koseri/farmeri. Phylogenomic analysis of the shared genes between BP-1(T), BP-2 and type strains from Kluyvera, Citrobacter, Escherichia, Salmonella, Kosakonia, Siccibacter and Shigella indicate that BP-1(T) and BP-2 isolates form a distinct branch from these genera. Average Nucleotide Identity analysis indicates that BP-1(T) and BP-2 are the same species. The biochemical and phylogenomic analysis indicate strains BP-1(T) and BP-2 represent a novel species from a new genus within the Enterobacteriaceae family, for which the name Superficieibacter electus gen. nov., sp. nov., is proposed. The type strain is BP-1(T) (= ATCC BAA-2937, = NBRC 113412).</p

Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation

Five loci, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, are used for analysing 129 pleosporalean taxa representing 59 genera and 15 families in the current classification of Pleosporales. The suborder Pleosporineae is emended to include four families, viz. Didymellaceae, Leptosphaeriaceae, Phaeosphaeriaceae and Pleosporaceae. In addition, two new families are introduced, i.e. Amniculicolaceae and Lentitheciaceae. Pleomassariaceae is treated as a synonym of Melanommataceae, and new circumscriptions of Lophiostomataceae s. str, Massarinaceae and Lophiotrema are proposed. Familial positions of Entodesmium and Setomelanomma in Phaeosphaeriaceae, Neophaeosphaeria in Leptosphaeriaceae, Leptosphaerulina, Macroventuria and Platychora in Didymellaceae, Pleomassaria in Melanommataceae and Bimuria, Didymocrea, Karstenula and Paraphaeosphaeria in Montagnulaceae are clarified. Both ecological and morphological characters show varying degrees of phylogenetic significance. Pleosporales is most likely derived from a saprobic ancestor with fissitunicate asci containing conspicuous ocular chambers and apical rings. Nutritional shifts in Pleosporales likely occured from saprotrophic to hemibiotrophic or biotrophic

Dendrobium candidum quality detection in both food and medicine agricultural product: Policy, status, and prospective

Dendrobium candidum (DC) is an agricultural product for both food and medicine. It has a variety of beneficial effects on the human body with antioxidant, anti-inflammatory, antitumor, enhancing immune function, and other pharmacological activities. Due to less natural distribution, harsh growth conditions, slow growth, low reproduction rate, and excessive logging, wild DC has been seriously damaged and listed as an endangered herbal medicine variety in China. At present, the quality of DC was uneven in the market, so it is very necessary to detect its quality. This article summarized the methods of DC quality detection with traditional and rapid nondestructive, and it also expounded the correlation between DC quality factor and endophytes, which provides a theoretical basis for a variety of rapid detection methods in macromolecules. At last, this article put forward a variety of rapid nondestructive detection methods based on the emission spectrum. In view of the complexity of molecular structure, the quality correlation established by spectral analysis was greatly affected by varieties and environment. We discussed the possibility of DC quality detection based on the molecular dynamic calculation and simulation mechanism. Also, a multimodal fusion method was proposed to detect the quality. The literature review suggests that it is very necessary to understand the structure performance relationship, kinetic properties, and reaction characteristics of chemical substances at the molecular level by means of molecular chemical calculation and simulation, to detect a certain substance more accurately. At the same time, several modes are combined to form complementarity, eliminate ambiguity, and uncertainty and fuse the information of multiple modes to obtain more accurate judgment results

The fossil tragulids of the Siwalik Formations of Southern Asia

Tragulids are common in the Early Miocene through Pliocene Siwalik faunas of the Indian Subcontinent where they are represented by as many as 17 species. Large collections of Siwalik fossils have recently been made by collaborative projects from Harvard University, the University of Arizona, the Geological Survey of Pakistan, and the Pakistan Museum of Natural History. The collections together comprise over 3700 specimens, including dental, cranial, and postcranial elements. Most of this fossil material is from northern and southwestern Pakistan from well-dated stratigraphic sections. The oldest definite tragulids are from the Early Miocene Vihowa Formation and are around 18.7 Ma, while the youngest are in the Pliocene Tatrot Formation and are 3.3 Ma. The fossil tragulids of the Siwaliks differ from the extant species in a number of ways. Importantly, they have a much wider range of body sizes, ranging from 1 to nearly 76 kg. Consequently the small species overlap with the smallest species of extant Tragulus, while the large species approach medium size bovids and cervids. Compared to other ruminants, Siwalik tragulids are also relatively abundant and species rich. Although the status of some described species is uncertain, preliminary analysis indicates there are many as yet undescribed species. Three genera are known and typically at least four species co-exist at any one time during the Miocene. The history of the south Asian tragulids can be correlated to documented environmental changes. The Siwalik deposits formed in a large fluvial system, with mostly forested or wooded low relief floodplains having abundant cover and fruit. Isotopic analyses of tooth enamel and soil carbonates indicate the vegetation was dominated by C3 plants until 9 Ma, after which there was a shift to a more seasonally dry monsoon climate, undoubtedly accounting for a Late Miocene change in the relative abundance of tragulids