8,093 research outputs found
Predicting Intermediate Storage Performance for Workflow Applications
Configuring a storage system to better serve an application is a challenging
task complicated by a multidimensional, discrete configuration space and the
high cost of space exploration (e.g., by running the application with different
storage configurations). To enable selecting the best configuration in a
reasonable time, we design an end-to-end performance prediction mechanism that
estimates the turn-around time of an application using storage system under a
given configuration. This approach focuses on a generic object-based storage
system design, supports exploring the impact of optimizations targeting
workflow applications (e.g., various data placement schemes) in addition to
other, more traditional, configuration knobs (e.g., stripe size or replication
level), and models the system operation at data-chunk and control message
level.
This paper presents our experience to date with designing and using this
prediction mechanism. We evaluate this mechanism using micro- as well as
synthetic benchmarks mimicking real workflow applications, and a real
application.. A preliminary evaluation shows that we are on a good track to
meet our objectives: it can scale to model a workflow application run on an
entire cluster while offering an over 200x speedup factor (normalized by
resource) compared to running the actual application, and can achieve, in the
limited number of scenarios we study, a prediction accuracy that enables
identifying the best storage system configuration
Scientific Computing Meets Big Data Technology: An Astronomy Use Case
Scientific analyses commonly compose multiple single-process programs into a
dataflow. An end-to-end dataflow of single-process programs is known as a
many-task application. Typically, tools from the HPC software stack are used to
parallelize these analyses. In this work, we investigate an alternate approach
that uses Apache Spark -- a modern big data platform -- to parallelize
many-task applications. We present Kira, a flexible and distributed astronomy
image processing toolkit using Apache Spark. We then use the Kira toolkit to
implement a Source Extractor application for astronomy images, called Kira SE.
With Kira SE as the use case, we study the programming flexibility, dataflow
richness, scheduling capacity and performance of Apache Spark running on the
EC2 cloud. By exploiting data locality, Kira SE achieves a 2.5x speedup over an
equivalent C program when analyzing a 1TB dataset using 512 cores on the Amazon
EC2 cloud. Furthermore, we show that by leveraging software originally designed
for big data infrastructure, Kira SE achieves competitive performance to the C
implementation running on the NERSC Edison supercomputer. Our experience with
Kira indicates that emerging Big Data platforms such as Apache Spark are a
performant alternative for many-task scientific applications
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