18,668 research outputs found
Automated detection of brain abnormalities in neonatal hypoxia ischemic injury from MR images.
We compared the efficacy of three automated brain injury detection methods, namely symmetry-integrated region growing (SIRG), hierarchical region splitting (HRS) and modified watershed segmentation (MWS) in human and animal magnetic resonance imaging (MRI) datasets for the detection of hypoxic ischemic injuries (HIIs). Diffusion weighted imaging (DWI, 1.5T) data from neonatal arterial ischemic stroke (AIS) patients, as well as T2-weighted imaging (T2WI, 11.7T, 4.7T) at seven different time-points (1, 4, 7, 10, 17, 24 and 31 days post HII) in rat-pup model of hypoxic ischemic injury were used to assess the temporal efficacy of our computational approaches. Sensitivity, specificity, and similarity were used as performance metrics based on manual ('gold standard') injury detection to quantify comparisons. When compared to the manual gold standard, automated injury location results from SIRG performed the best in 62% of the data, while 29% for HRS and 9% for MWS. Injury severity detection revealed that SIRG performed the best in 67% cases while 33% for HRS. Prior information is required by HRS and MWS, but not by SIRG. However, SIRG is sensitive to parameter-tuning, while HRS and MWS are not. Among these methods, SIRG performs the best in detecting lesion volumes; HRS is the most robust, while MWS lags behind in both respects
Visual-hint Boundary to Segment Algorithm for Image Segmentation
Image segmentation has been a very active research topic in image analysis
area. Currently, most of the image segmentation algorithms are designed based
on the idea that images are partitioned into a set of regions preserving
homogeneous intra-regions and inhomogeneous inter-regions. However, human
visual intuition does not always follow this pattern. A new image segmentation
method named Visual-Hint Boundary to Segment (VHBS) is introduced, which is
more consistent with human perceptions. VHBS abides by two visual hint rules
based on human perceptions: (i) the global scale boundaries tend to be the real
boundaries of the objects; (ii) two adjacent regions with quite different
colors or textures tend to result in the real boundaries between them. It has
been demonstrated by experiments that, compared with traditional image
segmentation method, VHBS has better performance and also preserves higher
computational efficiency.Comment: 45 page
Flat zones filtering, connected operators, and filters by reconstruction
This correspondence deals with the notion of connected operators. Starting from the definition for operator acting on sets, it is shown how to extend it to operators acting on function. Typically, a connected operator acting on a function is a transformation that enlarges the partition of the space created by the flat zones of the functions. It is shown that from any connected operator acting on sets, one can construct a connected operator for functions (however, it is not the unique way of generating connected operators for functions). Moreover, the concept of pyramid is introduced in a formal way. It is shown that, if a pyramid is based on connected operators, the flat zones of the functions increase with the level of the pyramid. In other words, the flat zones are nested. Filters by reconstruction are defined and their main properties are presented. Finally, some examples of application of connected operators and use of flat zones are described.Peer ReviewedPostprint (published version
A Cosmic Watershed: the WVF Void Detection Technique
On megaparsec scales the Universe is permeated by an intricate filigree of
clusters, filaments, sheets and voids, the Cosmic Web. For the understanding of
its dynamical and hierarchical history it is crucial to identify objectively
its complex morphological components. One of the most characteristic aspects is
that of the dominant underdense Voids, the product of a hierarchical process
driven by the collapse of minor voids in addition to the merging of large ones.
In this study we present an objective void finder technique which involves a
minimum of assumptions about the scale, structure and shape of voids. Our void
finding method, the Watershed Void Finder (WVF), is based upon the Watershed
Transform, a well-known technique for the segmentation of images. Importantly,
the technique has the potential to trace the existing manifestations of a void
hierarchy. The basic watershed transform is augmented by a variety of
correction procedures to remove spurious structure resulting from sampling
noise. This study contains a detailed description of the WVF. We demonstrate
how it is able to trace and identify, relatively parameter free, voids and
their surrounding (filamentary and planar) boundaries. We test the technique on
a set of Kinematic Voronoi models, heuristic spatial models for a cellular
distribution of matter. Comparison of the WVF segmentations of low noise and
high noise Voronoi models with the quantitatively known spatial characteristics
of the intrinsic Voronoi tessellation shows that the size and shape of the
voids are succesfully retrieved. WVF manages to even reproduce the full void
size distribution function.Comment: 24 pages, 15 figures, MNRAS accepted, for full resolution, see
http://www.astro.rug.nl/~weygaert/tim1publication/watershed.pd
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