452 research outputs found

    Computational Methods for Image Acquisition and Analysis with Applications in Optical Coherence Tomography

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    The computational approach to image acquisition and analysis plays an important role in medical imaging and optical coherence tomography (OCT). This thesis is dedicated to the development and evaluation of algorithmic solutions for better image acquisition and analysis with a focus on OCT retinal imaging. For image acquisition, we first developed, implemented, and systematically evaluated a compressive sensing approach for image/signal acquisition for single-pixel camera architectures and an OCT system. Our evaluation outcome provides a detailed insight into implementing compressive data acquisition of those imaging systems. We further proposed a convolutional neural network model, LSHR-Net, as the first deep-learning imaging solution for the single-pixel camera. This method can achieve better accuracy, hardware-efficient image acquisition and reconstruction than the conventional compressive sensing algorithm. Three image analysis methods were proposed to achieve retinal OCT image analysis with high accuracy and robustness. We first proposed a framework for healthy retinal layer segmentation. Our framework consists of several image processing algorithms specifically aimed at segmenting a total of 12 thin retinal cell layers, outperforming other segmentation methods. Furthermore, we proposed two deep-learning-based models to segment retinal oedema lesions in OCT images, with particular attention on processing small-scale datasets. The first model leverages transfer learning to implement oedema segmentation and achieves better accuracy than comparable methods. Based on the meta-learning concept, a second model was designed to be a solution for general medical image segmentation. The results of this work indicate that our model can be applied to retinal OCT images and other small-scale medical image data, such as skin cancer, demonstrated in this thesis

    Noninvasive Assessment of Photoreceptor Structure and Function in the Human Retina

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    The human photoreceptor mosaic underlies the first steps of vision; thus, even subtle defects in the mosaic can result in severe vision loss. The retina can be examined directly using clinical tools; however these devices lack the resolution necessary to visualize the photoreceptor mosaic. The primary limiting factor of these devices is the optical aberrations of the human eye. These aberrations are surmountable with the incorporation of adaptive optics (AO) to ophthalmoscopes, enabling imaging of the photoreceptor mosaic with cellular resolution. Despite the potential of AO imaging, much work remains before this technology can be translated to the clinic. Metrics used in the analysis of AO images are not standardized and are rarely subjected to validation, limiting the ability to reliably track structural changes in the photoreceptor mosaic geometry. Preceding the extraction of measurements, photoreceptors must be identified within the retinal image itself. This introduces error from both incorrectly identified cells and image distortion. We developed a novel method to extract measures of cell spacing from AO images that does not require identification of individual cells. In addition, we examined the sensitivity of various metrics in detecting changes in the mosaic and assessed the absolute accuracy of measurements made in the presence of image distortion. We also developed novel metrics for describing the mosaic, which may offer advantages over more traditional metrics of density and spacing. These studies provide a valuable basis for monitoring the photoreceptor mosaic longitudinally. As part of this work, we developed software (Mosaic Analytics) that can be used to standardize analytical efforts across different research groups. In addition, one of the more salient features of the appearance of individual cone photoreceptors is that they vary considerably in their reflectance. It has been proposed that this reflectance signal could be used as a surrogate measure of cone health. As a first step to understanding the cellular origin of these changes, we examined the reflectance properties of the rod photoreceptor mosaic. The observed variation in rod reflectivity over time suggests a common governing physiological process between rods and cones

    VLSI analogs of neuronal visual processing: a synthesis of form and function

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    This thesis describes the development and testing of a simple visual system fabricated using complementary metal-oxide-semiconductor (CMOS) very large scale integration (VLSI) technology. This visual system is composed of three subsystems. A silicon retina, fabricated on a single chip, transduces light and performs signal processing in a manner similar to a simple vertebrate retina. A stereocorrespondence chip uses bilateral retinal input to estimate the location of objects in depth. A silicon optic nerve allows communication between chips by a method that preserves the idiom of action potential transmission in the nervous system. Each of these subsystems illuminates various aspects of the relationship between VLSI analogs and their neurobiological counterparts. The overall synthetic visual system demonstrates that analog VLSI can capture a significant portion of the function of neural structures at a systems level, and concomitantly, that incorporating neural architectures leads to new engineering approaches to computation in VLSI. The relationship between neural systems and VLSI is rooted in the shared limitations imposed by computing in similar physical media. The systems discussed in this text support the belief that the physical limitations imposed by the computational medium significantly affect the evolving algorithm. Since circuits are essentially physical structures, I advocate the use of analog VLSI as powerful medium of abstraction, suitable for understanding and expressing the function of real neural systems. The working chip elevates the circuit description to a kind of synthetic formalism. The behaving physical circuit provides a formal test of theories of function that can be expressed in the language of circuits

    Data-guided statistical sparse measurements modeling for compressive sensing

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    Digital image acquisition can be a time consuming process for situations where high spatial resolution is required. As such, optimizing the acquisition mechanism is of high importance for many measurement applications. Acquiring such data through a dynamically small subset of measurement locations can address this problem. In such a case, the measured information can be regarded as incomplete, which necessitates the application of special reconstruction tools to recover the original data set. The reconstruction can be performed based on the concept of sparse signal representation. Recovering signals and images from their sub-Nyquist measurements forms the core idea of compressive sensing (CS). In this work, a CS-based data-guided statistical sparse measurements method is presented, implemented and evaluated. This method significantly improves image reconstruction from sparse measurements. In the data-guided statistical sparse measurements approach, signal sampling distribution is optimized for improving image reconstruction performance. The sampling distribution is based on underlying data rather than the commonly used uniform random distribution. The optimal sampling pattern probability is accomplished by learning process through two methods - direct and indirect. The direct method is implemented for learning a nonparametric probability density function directly from the dataset. The indirect learning method is implemented for cases where a mapping between extracted features and the probability density function is required. The unified model is implemented for different representation domains, including frequency domain and spatial domain. Experiments were performed for multiple applications such as optical coherence tomography, bridge structure vibration, robotic vision, 3D laser range measurements and fluorescence microscopy. Results show that the data-guided statistical sparse measurements method significantly outperforms the conventional CS reconstruction performance. Data-guided statistical sparse measurements method achieves much higher reconstruction signal-to-noise ratio for the same compression rate as the conventional CS. Alternatively, Data-guided statistical sparse measurements method achieves similar reconstruction signal-to-noise ratio as the conventional CS with significantly fewer samples

    Event-based neuromorphic stereo vision

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    The Fifth NASA Symposium on VLSI Design

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    The fifth annual NASA Symposium on VLSI Design had 13 sessions including Radiation Effects, Architectures, Mixed Signal, Design Techniques, Fault Testing, Synthesis, Signal Processing, and other Featured Presentations. The symposium provides insights into developments in VLSI and digital systems which can be used to increase data systems performance. The presentations share insights into next generation advances that will serve as a basis for future VLSI design

    Topics in Adaptive Optics

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    Advances in adaptive optics technology and applications move forward at a rapid pace. The basic idea of wavefront compensation in real-time has been around since the mid 1970s. The first widely used application of adaptive optics was for compensating atmospheric turbulence effects in astronomical imaging and laser beam propagation. While some topics have been researched and reported for years, even decades, new applications and advances in the supporting technologies occur almost daily. This book brings together 11 original chapters related to adaptive optics, written by an international group of invited authors. Topics include atmospheric turbulence characterization, astronomy with large telescopes, image post-processing, high power laser distortion compensation, adaptive optics and the human eye, wavefront sensors, and deformable mirrors
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