5,184 research outputs found
Optimality program in segment and string graphs
Planar graphs are known to allow subexponential algorithms running in time
or for most of the paradigmatic
problems, while the brute-force time is very likely to be
asymptotically best on general graphs. Intrigued by an algorithm packing curves
in by Fox and Pach [SODA'11], we investigate which
problems have subexponential algorithms on the intersection graphs of curves
(string graphs) or segments (segment intersection graphs) and which problems
have no such algorithms under the ETH (Exponential Time Hypothesis). Among our
results, we show that, quite surprisingly, 3-Coloring can also be solved in
time on string graphs while an algorithm running
in time for 4-Coloring even on axis-parallel segments (of unbounded
length) would disprove the ETH. For 4-Coloring of unit segments, we show a
weaker ETH lower bound of which exploits the celebrated
Erd\H{o}s-Szekeres theorem. The subexponential running time also carries over
to Min Feedback Vertex Set but not to Min Dominating Set and Min Independent
Dominating Set.Comment: 19 pages, 15 figure
On the Hardness and Inapproximability of Recognizing Wheeler Graphs
In recent years several compressed indexes based on variants of the Burrows-Wheeler transformation have been introduced. Some of these are used to index structures far more complex than a single string, as was originally done with the FM-index [Ferragina and Manzini, J. ACM 2005]. As such, there has been an increasing effort to better understand under which conditions such an indexing scheme is possible. This has led to the introduction of Wheeler graphs [Gagie et al., Theor. Comput. Sci., 2017]. Gagie et al. showed that de Bruijn graphs, generalized compressed suffix arrays, and several other BWT related structures can be represented as Wheeler graphs, and that Wheeler graphs can be indexed in a way which is space efficient. Hence, being able to recognize whether a given graph is a Wheeler graph, or being able to approximate a given graph by a Wheeler graph, could have numerous applications in indexing. Here we resolve the open question of whether there exists an efficient algorithm for recognizing if a given graph is a Wheeler graph. We present:
- The problem of recognizing whether a given graph G=(V,E) is a Wheeler graph is NP-complete for any edge label alphabet of size sigma >= 2, even when G is a DAG. This holds even on a restricted, subset of graphs called d-NFA\u27s for d >= 5. This is in contrast to recent results demonstrating the problem can be solved in polynomial time for d-NFA\u27s where d <= 2. We also show the recognition problem can be solved in linear time for sigma =1;
- There exists an 2^{e log sigma + O(n + e)} time exact algorithm where n = |V| and e = |E|. This algorithm relies on graph isomorphism being computable in strictly sub-exponential time;
- We define an optimization variant of the problem called Wheeler Graph Violation, abbreviated WGV, where the aim is to remove the minimum number of edges in order to obtain a Wheeler graph. We show WGV is APX-hard, even when G is a DAG, implying there exists a constant C >= 1 for which there is no C-approximation algorithm (unless P = NP). Also, conditioned on the Unique Games Conjecture, for all C >= 1, it is NP-hard to find a C-approximation;
- We define the Wheeler Subgraph problem, abbreviated WS, where the aim is to find the largest subgraph which is a Wheeler Graph (the dual of the WGV). In contrast to WGV, we prove that the WS problem is in APX for sigma=O(1);
The above findings suggest that most problems under this theme are computationally difficult. However, we identify a class of graphs for which the recognition problem is polynomial time solvable, raising the open question of which parameters determine this problem\u27s difficulty
Regular Languages meet Prefix Sorting
Indexing strings via prefix (or suffix) sorting is, arguably, one of the most
successful algorithmic techniques developed in the last decades. Can indexing
be extended to languages? The main contribution of this paper is to initiate
the study of the sub-class of regular languages accepted by an automaton whose
states can be prefix-sorted. Starting from the recent notion of Wheeler graph
[Gagie et al., TCS 2017]-which extends naturally the concept of prefix sorting
to labeled graphs-we investigate the properties of Wheeler languages, that is,
regular languages admitting an accepting Wheeler finite automaton.
Interestingly, we characterize this family as the natural extension of regular
languages endowed with the co-lexicographic ordering: when sorted, the strings
belonging to a Wheeler language are partitioned into a finite number of
co-lexicographic intervals, each formed by elements from a single Myhill-Nerode
equivalence class. Moreover: (i) We show that every Wheeler NFA (WNFA) with
states admits an equivalent Wheeler DFA (WDFA) with at most
states that can be computed in time. This is in sharp contrast with
general NFAs. (ii) We describe a quadratic algorithm to prefix-sort a proper
superset of the WDFAs, a -time online algorithm to sort acyclic
WDFAs, and an optimal linear-time offline algorithm to sort general WDFAs. By
contribution (i), our algorithms can also be used to index any WNFA at the
moderate price of doubling the automaton's size. (iii) We provide a
minimization theorem that characterizes the smallest WDFA recognizing the same
language of any input WDFA. The corresponding constructive algorithm runs in
optimal linear time in the acyclic case, and in time in the
general case. (iv) We show how to compute the smallest WDFA equivalent to any
acyclic DFA in nearly-optimal time.Comment: added minimization theorems; uploaded submitted version; New version
with new results (W-MH theorem, linear determinization), added author:
Giovanna D'Agostin
On the Size of Outer-String Representations
Outer-string graphs, i.e., graphs that can be represented as intersection of curves in 2D, all of which end in the outer-face, have recently received much interest, especially since it was shown that the independent set problem can be solved efficiently in such graphs. However, the run-time for the independent set problem depends on N, the number of segments in an outer-string representation, rather than the number n of vertices of the graph. In this paper, we argue that for some outer-string graphs, N must be exponential in n. We also study some special string graphs, viz. monotone string graphs, and argue that for them N can be assumed to be polynomial in n. Finally we give an algorithm for independent set in so-called strip-grounded monotone outer-string graphs that is polynomial in n
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