A Survey on Soft Subspace Clustering

Subspace clustering (SC) is a promising clustering technology to identify clusters based on their associations with subspaces in high dimensional spaces. SC can be classified into hard subspace clustering (HSC) and soft subspace clustering (SSC). While HSC algorithms have been extensively studied and well accepted by the scientific community, SSC algorithms are relatively new but gaining more attention in recent years due to better adaptability. In the paper, a comprehensive survey on existing SSC algorithms and the recent development are presented. The SSC algorithms are classified systematically into three main categories, namely, conventional SSC (CSSC), independent SSC (ISSC) and extended SSC (XSSC). The characteristics of these algorithms are highlighted and the potential future development of SSC is also discussed.Comment: This paper has been published in Information Sciences Journal in 201

Protein docking refinement by convex underestimation in the low-dimensional subspace of encounter complexes

We propose a novel stochastic global optimization algorithm with applications to the refinement stage of protein docking prediction methods. Our approach can process conformations sampled from multiple clusters, each roughly corresponding to a different binding energy funnel. These clusters are obtained using a density-based clustering method. In each cluster, we identify a smooth “permissive” subspace which avoids high-energy barriers and then underestimate the binding energy function using general convex polynomials in this subspace. We use the underestimator to bias sampling towards its global minimum. Sampling and subspace underestimation are repeated several times and the conformations sampled at the last iteration form a refined ensemble. We report computational results on a comprehensive benchmark of 224 protein complexes, establishing that our refined ensemble significantly improves the quality of the conformations of the original set given to the algorithm. We also devise a method to enhance the ensemble from which near-native models are selected.Published versio

Multi-GCN: Graph Convolutional Networks for Multi-View Networks, with Applications to Global Poverty

With the rapid expansion of mobile phone networks in developing countries, large-scale graph machine learning has gained sudden relevance in the study of global poverty. Recent applications range from humanitarian response and poverty estimation to urban planning and epidemic containment. Yet the vast majority of computational tools and algorithms used in these applications do not account for the multi-view nature of social networks: people are related in myriad ways, but most graph learning models treat relations as binary. In this paper, we develop a graph-based convolutional network for learning on multi-view networks. We show that this method outperforms state-of-the-art semi-supervised learning algorithms on three different prediction tasks using mobile phone datasets from three different developing countries. We also show that, while designed specifically for use in poverty research, the algorithm also outperforms existing benchmarks on a broader set of learning tasks on multi-view networks, including node labelling in citation networks

Stochastic Optimization for Deep CCA via Nonlinear Orthogonal Iterations

Deep CCA is a recently proposed deep neural network extension to the traditional canonical correlation analysis (CCA), and has been successful for multi-view representation learning in several domains. However, stochastic optimization of the deep CCA objective is not straightforward, because it does not decouple over training examples. Previous optimizers for deep CCA are either batch-based algorithms or stochastic optimization using large minibatches, which can have high memory consumption. In this paper, we tackle the problem of stochastic optimization for deep CCA with small minibatches, based on an iterative solution to the CCA objective, and show that we can achieve as good performance as previous optimizers and thus alleviate the memory requirement.Comment: in 2015 Annual Allerton Conference on Communication, Control and Computin

Scalable Image Retrieval by Sparse Product Quantization

Fast Approximate Nearest Neighbor (ANN) search technique for high-dimensional feature indexing and retrieval is the crux of large-scale image retrieval. A recent promising technique is Product Quantization, which attempts to index high-dimensional image features by decomposing the feature space into a Cartesian product of low dimensional subspaces and quantizing each of them separately. Despite the promising results reported, their quantization approach follows the typical hard assignment of traditional quantization methods, which may result in large quantization errors and thus inferior search performance. Unlike the existing approaches, in this paper, we propose a novel approach called Sparse Product Quantization (SPQ) to encoding the high-dimensional feature vectors into sparse representation. We optimize the sparse representations of the feature vectors by minimizing their quantization errors, making the resulting representation is essentially close to the original data in practice. Experiments show that the proposed SPQ technique is not only able to compress data, but also an effective encoding technique. We obtain state-of-the-art results for ANN search on four public image datasets and the promising results of content-based image retrieval further validate the efficacy of our proposed method.Comment: 12 page

Median K-flats for hybrid linear modeling with many outliers

We describe the Median K-Flats (MKF) algorithm, a simple online method for hybrid linear modeling, i.e., for approximating data by a mixture of flats. This algorithm simultaneously partitions the data into clusters while finding their corresponding best approximating l1 d-flats, so that the cumulative l1 error is minimized. The current implementation restricts d-flats to be d-dimensional linear subspaces. It requires a negligible amount of storage, and its complexity, when modeling data consisting of N points in D-dimensional Euclidean space with K d-dimensional linear subspaces, is of order O(n K d D+n d^2 D), where n is the number of iterations required for convergence (empirically on the order of 10^4). Since it is an online algorithm, data can be supplied to it incrementally and it can incrementally produce the corresponding output. The performance of the algorithm is carefully evaluated using synthetic and real data