A Process Calculus for Spatially-explicit Ecological Models

We propose PALPS, a Process Algebra with Locations for Population Systems. PALPS allows us to produce spatially-explicit, individual-based models and to reason about their behavior. Our calculus has two levels: at the first level we may define the behavior of an individual of a population while, at the second level, we may specify a system as the collection of individuals of various species located in space, moving through their life cycle while changing their location, if they so wish, and interacting with each other in various ways such as preying on each other. Furthermore, we propose a probabilistic temporal logic for reasoning about the behavior of PALPS processes. We illustrate our framework via models of dispersal in metapopulations.Comment: In Proceedings MeCBIC 2012, arXiv:1211.347

Design and Development of Software Tools for Bio-PEPA

This paper surveys the design of software tools for the Bio-PEPA process algebra. Bio-PEPA is a high-level language for modelling biological systems such as metabolic pathways and other biochemical reaction networks. Through providing tools for this modelling language we hope to allow easier use of a range of simulators and model-checkers thereby freeing the modeller from the responsibility of developing a custom simulator for the problem of interest. Further, by providing mappings to a range of different analysis tools the Bio-PEPA language allows modellers to compare analysis results which have been computed using independent numerical analysers, which enhances the reliability and robustness of the results computed.

Rate-Based Transition Systems for Stochastic Process Calculi

A variant of Rate Transition Systems (RTS), proposed by Klin and Sassone, is introduced and used as the basic model for defining stochastic behaviour of processes. The transition relation used in our variant associates to each process, for each action, the set of possible futures paired with a measure indicating their rates. We show how RTS can be used for providing the operational semantics of stochastic extensions of classical formalisms, namely CSP and CCS. We also show that our semantics for stochastic CCS guarantees associativity of parallel composition. Similarly, in contrast with the original definition by Priami, we argue that a semantics for stochastic π-calculus can be provided that guarantees associativity of parallel composition

Isomorphism Checking for Symmetry Reduction

In this paper, we show how isomorphism checking can be used as an effective technique for symmetry reduction. Reduced state spaces are equivalent to the original ones under a strong notion of bisimilarity which preserves the multiplicity of outgoing transitions, and therefore also preserves stochastic temporal logics. We have implemented this in a setting where states are arbitrary graphs. Since no efficiently computable canonical representation is known for arbitrary graphs modulo isomorphism, we define an isomorphism-predicting hash function on the basis of an existing partition refinement algorithm. As an example, we report a factorial state space reduction on a model of an ad-hoc network connectivity protocol

Synthesising Strategy Improvement and Recursive Algorithms for Solving 2.5 Player Parity Games

2.5 player parity games combine the challenges posed by 2.5 player reachability games and the qualitative analysis of parity games. These two types of problems are best approached with different types of algorithms: strategy improvement algorithms for 2.5 player reachability games and recursive algorithms for the qualitative analysis of parity games. We present a method that - in contrast to existing techniques - tackles both aspects with the best suited approach and works exclusively on the 2.5 player game itself. The resulting technique is powerful enough to handle games with several million states

Stochastic Collapse and Decoherence of a Non-Dissipative Forced Harmonic Oscillator

Careful monitoring of harmonically bound (or as a limiting case, free) masses is the basis of current and future gravitational wave detectors, and of nanomechanical devices designed to access the quantum regime. We analyze the effects of stochastic localization models for state vector reduction, and of related models for environmental decoherence, on such systems, focusing our analysis on the non-dissipative forced harmonic oscillator, and its free mass limit. We derive an explicit formula for the time evolution of the expectation of a general operator in the presence of stochastic reduction or environmentally induced decoherence, for both the non-dissipative harmonic oscillator and the free mass. In the case of the oscillator, we also give a formula for the time evolution of the matrix element of the stochastic expectation density matrix between general coherent states. We show that the stochastic expectation of the variance of a Hermitian operator in any unraveling of the stochastic process is bounded by the variance computed from the stochastic expectation of the density matrix, and we develop a formal perturbation theory for calculating expectation values of operators within any unraveling. Applying our results to current gravitational wave interferometer detectors and nanomechanical systems, we conclude that the deviations from quantum mechanics predicted by the continuous spontaneous localization (CSL) model of state vector reduction are at least five orders of magnitude below the relevant standard quantum limits for these experiments. The proposed LISA gravitational wave detector will be two orders of magnitude away from the capability of observing an effect.Comment: TeX; 34 page

Stochastic Modeling and Performance Analysis of Multimedia SoCs

International audienceQuality of video and audio output is a design-time constraint for portable multimedia devices. Unfortunately, there is a huge cost (e.g. buffer size) incurred to deterministically guarantee good playout quality; the worst-case workload and the timing behavior can be significantly larger than the average-case due to high variability in a multimedia system. In future mobile devices, the playout buffer size is expected to increase, so, buffer dimensioning will remain as an important problem in system design. We propose a probabilistic analytical framework that enables low-cost system design and provides bounds for playing acceptable multimedia quality. We compare our approach with a framework comprising both simulation and statistical model checking, built to simulate large embedded systems in detail. Our results show significant reduction in output buffer size compared to deterministic frameworks

Process algebra for performance evaluation

This paper surveys the theoretical developments in the field of stochastic process algebras, process algebras where action occurrences may be subject to a delay that is determined by a random variable. A huge class of resource-sharing systems – like large-scale computers, client–server architectures, networks – can accurately be described using such stochastic specification formalisms. The main emphasis of this paper is the treatment of operational semantics, notions of equivalence, and (sound and complete) axiomatisations of these equivalences for different types of Markovian process algebras, where delays are governed by exponential distributions. Starting from a simple actionless algebra for describing time-homogeneous continuous-time Markov chains, we consider the integration of actions and random delays both as a single entity (like in known Markovian process algebras like TIPP, PEPA and EMPA) and as separate entities (like in the timed process algebras timed CSP and TCCS). In total we consider four related calculi and investigate their relationship to existing Markovian process algebras. We also briefly indicate how one can profit from the separation of time and actions when incorporating more general, non-Markovian distributions