195 research outputs found
The circular SiZer, inferred persistence of shape parameters and application to early stem cell differentiation
We generalize the SiZer of Chaudhuri and Marron (J. Amer. Statist. Assoc. 94
(1999) 807-823, Ann. Statist. 28 (2000) 408-428) for the detection of shape
parameters of densities on the real line to the case of circular data. It turns
out that only the wrapped Gaussian kernel gives a symmetric, strongly Lipschitz
semi-group satisfying "circular" causality, that is, not introducing possibly
artificial modes with increasing levels of smoothing. Some notable differences
between Euclidean and circular scale space theory are highlighted. Based on
this, we provide an asymptotic theory to make inference about the persistence
of shape features. The resulting circular mode persistence diagram is applied
to the analysis of early mechanically-induced differentiation in adult human
stem cells from their actin-myosin filament structure. As a consequence, the
circular SiZer based on the wrapped Gaussian kernel (WiZer) allows the
verification at a controlled error level of the observation reported by Zemel
et al. (Nat. Phys. 6 (2010) 468-473): Within early stem cell differentiation,
polarizations of stem cells exhibit preferred directions in three different
micro-environments.Comment: Published at http://dx.doi.org/10.3150/15-BEJ722 in the Bernoulli
(http://isi.cbs.nl/bernoulli/) by the International Statistical
Institute/Bernoulli Society (http://isi.cbs.nl/BS/bshome.htm
A Survey of Surface Reconstruction from Point Clouds
International audienceThe area of surface reconstruction has seen substantial progress in the past two decades. The traditional problem addressed by surface reconstruction is to recover the digital representation of a physical shape that has been scanned, where the scanned data contains a wide variety of defects. While much of the earlier work has been focused on reconstructing a piece-wise smooth representation of the original shape, recent work has taken on more specialized priors to address significantly challenging data imperfections, where the reconstruction can take on different representations – not necessarily the explicit geometry. We survey the field of surface reconstruction, and provide a categorization with respect to priors, data imperfections, and reconstruction output. By considering a holistic view of surface reconstruction, we show a detailed characterization of the field, highlight similarities between diverse reconstruction techniques, and provide directions for future work in surface reconstruction
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Electro-spinning/netting: A strategy for the fabrication of three-dimensional polymer nano-fiber/nets.
Since 2006, a rapid development has been achieved in a subject area, so called electro-spinning/netting (ESN), which comprises the conventional electrospinning process and a unique electro-netting process. Electro-netting overcomes the bottleneck problem of electrospinning technique and provides a versatile method for generating spider-web-like nano-nets with ultrafine fiber diameter less than 20Â nm. Nano-nets, supported by the conventional electrospun nanofibers in the nano-fiber/nets (NFN) membranes, exhibit numerious attractive characteristics such as extremely small diameter, high porosity, and Steiner tree network geometry, which make NFN membranes optimal candidates for many significant applications. The progress made during the last few years in the field of ESN is highlighted in this review, with particular emphasis on results obtained in the author's research units. After a brief description of the development of the electrospinning and ESN techniques, several fundamental properties of NFN nanomaterials are addressed. Subsequently, the used polymers and the state-of-the-art strategies for the controllable fabrication of NFN membranes are highlighted in terms of the ESN process. Additionally, we highlight some potential applications associated with the remarkable features of NFN nanostructure. Our discussion is concluded with some personal perspectives on the future development in which this wonderful technique could be pursued
Computerized Analysis of Magnetic Resonance Images to Study Cerebral Anatomy in Developing Neonates
The study of cerebral anatomy in developing neonates is of great importance for
the understanding of brain development during the early period of life. This
dissertation therefore focuses on three challenges in the modelling of cerebral
anatomy in neonates during brain development. The methods that have been
developed all use Magnetic Resonance Images (MRI) as source data.
To facilitate study of vascular development in the neonatal period, a set of image
analysis algorithms are developed to automatically extract and model cerebral
vessel trees. The whole process consists of cerebral vessel tracking from
automatically placed seed points, vessel tree generation, and vasculature
registration and matching. These algorithms have been tested on clinical Time-of-
Flight (TOF) MR angiographic datasets.
To facilitate study of the neonatal cortex a complete cerebral cortex segmentation
and reconstruction pipeline has been developed. Segmentation of the neonatal
cortex is not effectively done by existing algorithms designed for the adult brain
because the contrast between grey and white matter is reversed. This causes pixels
containing tissue mixtures to be incorrectly labelled by conventional methods. The
neonatal cortical segmentation method that has been developed is based on a novel
expectation-maximization (EM) method with explicit correction for mislabelled
partial volume voxels. Based on the resulting cortical segmentation, an implicit
surface evolution technique is adopted for the reconstruction of the cortex in
neonates. The performance of the method is investigated by performing a detailed
landmark study.
To facilitate study of cortical development, a cortical surface registration algorithm
for aligning the cortical surface is developed. The method first inflates extracted
cortical surfaces and then performs a non-rigid surface registration using free-form
deformations (FFDs) to remove residual alignment. Validation experiments using
data labelled by an expert observer demonstrate that the method can capture local
changes and follow the growth of specific sulcus
Functionals of the Brownian motion, localization and metric graphs
We review several results related to the problem of a quantum particle in a
random environment.
In an introductory part, we recall how several functionals of the Brownian
motion arise in the study of electronic transport in weakly disordered metals
(weak localization).
Two aspects of the physics of the one-dimensional strong localization are
reviewed : some properties of the scattering by a random potential (time delay
distribution) and a study of the spectrum of a random potential on a bounded
domain (the extreme value statistics of the eigenvalues).
Then we mention several results concerning the diffusion on graphs, and more
generally the spectral properties of the Schr\"odinger operator on graphs. The
interest of spectral determinants as generating functions characterizing the
diffusion on graphs is illustrated.
Finally, we consider a two-dimensional model of a charged particle coupled to
the random magnetic field due to magnetic vortices. We recall the connection
between spectral properties of this model and winding functionals of the planar
Brownian motion.Comment: Review article. 50 pages, 21 eps figures. Version 2: section 5.5 and
conclusion added. Several references adde
Unstructured Grid Generation Techniques and Software
The Workshop on Unstructured Grid Generation Techniques and Software was conducted for NASA to assess its unstructured grid activities, improve the coordination among NASA centers, and promote technology transfer to industry. The proceedings represent contributions from Ames, Langley, and Lewis Research Centers, and the Johnson and Marshall Space Flight Centers. This report is a compilation of the presentations made at the workshop
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