The R Commander: A Basic-Statistics Graphical User Interface to R

Unlike S-PLUS, R does not incorporate a statistical graphical user interface (GUI), but it does include tools for building GUIs. Based on the tcltk package (which furnishes an interface to the Tcl/Tk GUI toolkit), the Rcmdr package provides a basic-statistics graphical user interface to R called the "R Commander." The design objectives of the R Commander were as follows: to support, through an easy-to-use, extensible, cross-platform GUI, the statistical functionality required for a basic-statistics course (though its current functionality has grown to include support for linear and generalized-linear models, and other more advanced features); to make it relatively difficult to do unreasonable things; and to render visible the relationship between choices made in the GUI and the R commands that they generate. The R Commander uses a simple and familiar menu/dialog-box interface. Top-level menus include File, Edit, Data, Statistics, Graphs, Models, Distributions, Tools, and Help, with the complete menu tree given in the paper. Each dialog box includes a Help button, which leads to a relevant help page. Menu and dialog-box selections generate R commands, which are recorded in a script window and are echoed, along with output, to an output window. The script window also provides the ability to edit, enter, and re-execute commands. Error messages, warnings, and some other information appear in a separate messages window. Data sets in the R Commander are simply R data frames, and can be read from attached packages or imported from files. Although several data frames may reside in memory, only one is "active" at any given time. There may also be an active statistical model (e.g., an R lm or glm ob ject). The purpose of this paper is to introduce and describe the use of the R Commander GUI; to describe the design and development of the R Commander; and to explain how the R Commander GUI can be extended. The second part of the paper (following a brief introduction) can serve as an introductory guide for students who will use the R Commander.

A Video Tour through ViSta 6.4

This paper offers a visual tour throughout ViSta 6.4, a freeware statistical program based on Lisp-Stat and focused on techniques for statistical visualization (Young 2004). This travel around ViSta is based on screen recordings that illustrate the main features of the program in action. The following aspects of ViSta 6.4 are displayed: the program's interface (ViSta's desktop, menubar and pop-up menus, help system); its data management capabilities (data input and editing, data transformations); features associated to data analysis (data description, statistical modeling); and the options for Lisp-Stat development in ViSta. The video recordings associated to this tour (.wmv files) can be visualized at http://www.jstatsoft.org/v13/i08/ using the Internet Explorer navigator, or by clicking on the figures in the paper.

Lost Opportunities: Why We Need a Variety of Statistical Languages

To the worker who only has a hammer, we are told, everything looks like a nail. Solutions to applied statistical problems are framed by the limitations imposed by statistical computing packages and languages. For better or worse, we can do what the packages do; we cannot do what the packages won't do. Statistical languages like R have basic tools that allow the analyst to design new hammers, but even in R we cannot build an arbitrary hammer, only ones within the limits imposed by the R language. XLISP-STAT imposes different limitations, so we can produce different hammers. In this article, I look at some of the tools in XLISP-STAT that allow the user to think about graphics in ways that cannot be easily replicated in other statistical languages. The interactive graphical methods available in XLISP-STAT lead to very different methodology than would be developed without the tools that XLISP-STAT provides. The general approach to graphics and indeed to data analysis in general is quite different in a package like Arc that is built on top of XLISP-STAT, than it is in other statistical packages. We discuss why that might be true, and why this depends on design options created by XLISP-STAT

BiplotGUI: Interactive Biplots in R

Biplots simultaneously provide information on both the samples and the variables of a data matrix in two- or three-dimensional representations. The BiplotGUI package provides a graphical user interface for the construction of, interaction with, and manipulation of biplots in R. The samples are represented as points, with coordinates determined either by the choice of biplot, principal coordinate analysis or multidimensional scaling. Various transformations and dissimilarity metrics are available. Information on the original variables is incorporated by linear or non-linear calibrated axes. Goodness-of-fit measures are provided. Additional descriptors can be superimposed, including convex hulls, alpha-bags, point densities and classification regions. Amongst the interactive features are dynamic variable value prediction, zooming and point and axis drag-and-drop. Output can easily be exported to the R workspace for further manipulation. Three-dimensional biplots are incorporated via the rgl package. The user requires almost no knowledge of R syntax.

Problems in the design and implementation of a GKS-based user interface for a graphical information system

CISRG discussion paper ;

Visual Programming: Concepts and Implementations

The computing environment has changed dramatically since the advent of the computer. Enhanced computer graphics and sheer processing power have ushered in a new age of computing. User interfaces have advanced from simple line entry to powerful graphical interfaces. With these advances, computer languages are no longer forced to be sequentially and textually-based. A new programming paradigm has evolved to harness the power of today's computing environment - visual programming. Visual programming provides the user with visible models which reflect physical objects. By connecting these visible models to each other, an executable program is created. By removing the inherent abstractions of textual languages, visual programming could lead computing into a new era

The R Commander: A Basic-Statistics Graphical User Interface to R

Unlike S-PLUS, R does not incorporate a statistical graphical user interface (GUI), but it does include tools for building GUIs. Based on the tcltk package (which furnishes an interface to the Tcl/Tk GUI toolkit), the Rcmdr package provides a basic-statistics graphical user interface to R called the "R Commander." The design objectives of the R Commander were as follows: to support, through an easy-to-use, extensible, cross-platform GUI, the statistical functionality required for a basic-statistics course (though its current functionality has grown to include support for linear and generalized-linear models, and other more advanced features); to make it relatively difficult to do unreasonable things; and to render visible the relationship between choices made in the GUI and the R commands that they generate. The R Commander uses a simple and familiar menu/dialog-box interface. Top-level menus include File, Edit, Data, Statistics, Graphs, Models, Distributions, Tools, and Help, with the complete menu tree given in the paper. Each dialog box includes a Help button, which leads to a relevant help page. Menu and dialog-box selections generate R commands, which are recorded in a script window and are echoed, along with output, to an output window. The script window also provides the ability to edit, enter, and re-execute commands. Error messages, warnings, and some other information appear in a separate messages window. Data sets in the R Commander are simply R data frames, and can be read from attached packages or imported from files. Although several data frames may reside in memory, only one is "active" at any given time. There may also be an active statistical model (e.g., an R lm or glm ob ject). The purpose of this paper is to introduce and describe the use of the R Commander GUI; to describe the design and development of the R Commander; and to explain how the R Commander GUI can be extended. The second part of the paper (following a brief introduction) can serve as an introductory guide for students who will use the R Commander

Development of a User Interface for a Regression Analysis Software Tool

An easy-to -use user interface was implemented in a highly automated regression analysis tool. The user interface was developed from the start to run on computers that use the Windows, Macintosh, Linux, or UNIX operating system. Many user interface features were specifically designed such that a novice or inexperienced user can apply the regression analysis tool with confidence. Therefore, the user interface s design minimizes interactive input from the user. In addition, reasonable default combinations are assigned to those analysis settings that influence the outcome of the regression analysis. These default combinations will lead to a successful regression analysis result for most experimental data sets. The user interface comes in two versions. The text user interface version is used for the ongoing development of the regression analysis tool. The official release of the regression analysis tool, on the other hand, has a graphical user interface that is more efficient to use. This graphical user interface displays all input file names, output file names, and analysis settings for a specific software application mode on a single screen which makes it easier to generate reliable analysis results and to perform input parameter studies. An object-oriented approach was used for the development of the graphical user interface. This choice keeps future software maintenance costs to a reasonable limit. Examples of both the text user interface and graphical user interface are discussed in order to illustrate the user interface s overall design approach

Interactive Java Tools for Exploring High-dimensional Data

The World Wide Web (WWW) is a new mechanism for providing information. At this point, the majority of the information on the WWW is static, which means it is incapable of responding to user input. Text, images, and video are examples of static information that can easily be included in a WWW page. With the advent of the Java programming language, it is now possible to embed dynamic information in the form of interactive programs called applets. Therefore, it is not only possible to transfer raw data over the WWW, but we can also now provide interactive graphics for displaying and exploring data in the context of a WWW page. In this paper, we will describe the use of Java applets that have been developed for the interactive display of high dimensional data on the WWW