210,838 research outputs found

    Hardware-accelerated interactive data visualization for neuroscience in Python.

    Get PDF
    Large datasets are becoming more and more common in science, particularly in neuroscience where experimental techniques are rapidly evolving. Obtaining interpretable results from raw data can sometimes be done automatically; however, there are numerous situations where there is a need, at all processing stages, to visualize the data in an interactive way. This enables the scientist to gain intuition, discover unexpected patterns, and find guidance about subsequent analysis steps. Existing visualization tools mostly focus on static publication-quality figures and do not support interactive visualization of large datasets. While working on Python software for visualization of neurophysiological data, we developed techniques to leverage the computational power of modern graphics cards for high-performance interactive data visualization. We were able to achieve very high performance despite the interpreted and dynamic nature of Python, by using state-of-the-art, fast libraries such as NumPy, PyOpenGL, and PyTables. We present applications of these methods to visualization of neurophysiological data. We believe our tools will be useful in a broad range of domains, in neuroscience and beyond, where there is an increasing need for scalable and fast interactive visualization

    A Generic Framework for Engineering Graph Canonization Algorithms

    Full text link
    The state-of-the-art tools for practical graph canonization are all based on the individualization-refinement paradigm, and their difference is primarily in the choice of heuristics they include and in the actual tool implementation. It is thus not possible to make a direct comparison of how individual algorithmic ideas affect the performance on different graph classes. We present an algorithmic software framework that facilitates implementation of heuristics as independent extensions to a common core algorithm. It therefore becomes easy to perform a detailed comparison of the performance and behaviour of different algorithmic ideas. Implementations are provided of a range of algorithms for tree traversal, target cell selection, and node invariant, including choices from the literature and new variations. The framework readily supports extraction and visualization of detailed data from separate algorithm executions for subsequent analysis and development of new heuristics. Using collections of different graph classes we investigate the effect of varying the selections of heuristics, often revealing exactly which individual algorithmic choice is responsible for particularly good or bad performance. On several benchmark collections, including a newly proposed class of difficult instances, we additionally find that our implementation performs better than the current state-of-the-art tools

    Interlingua based neural machine translation

    Get PDF
    We propose a machine translation architecture based on autoencoders and a shared interlingua representation that produce comparable results to state of the art systems. Also we define evaluation and visualization strategies as metrics of the performance of the architecture

    Visualizing and Understanding Convolutional Networks

    Full text link
    Large Convolutional Network models have recently demonstrated impressive classification performance on the ImageNet benchmark. However there is no clear understanding of why they perform so well, or how they might be improved. In this paper we address both issues. We introduce a novel visualization technique that gives insight into the function of intermediate feature layers and the operation of the classifier. We also perform an ablation study to discover the performance contribution from different model layers. This enables us to find model architectures that outperform Krizhevsky \etal on the ImageNet classification benchmark. We show our ImageNet model generalizes well to other datasets: when the softmax classifier is retrained, it convincingly beats the current state-of-the-art results on Caltech-101 and Caltech-256 datasets

    Learning the Roots of Visual Domain Shift

    Get PDF
    In this paper we focus on the spatial nature of visual domain shift, attempting to learn where domain adaptation originates in each given image of the source and target set. We borrow concepts and techniques from the CNN visualization literature, and learn domainnes maps able to localize the degree of domain specificity in images. We derive from these maps features related to different domainnes levels, and we show that by considering them as a preprocessing step for a domain adaptation algorithm, the final classification performance is strongly improved. Combined with the whole image representation, these features provide state of the art results on the Office dataset.Comment: Extended Abstrac

    Quantum Chemistry and Drug Design

    Get PDF
    The state-of-the-art computational chemistry software, visualization tools and high performance computing infrastructure are employed to assist the design of new and more effective drugs. At present a project focuses on the quantitative structure activity relationships of antimalarial drugs
    corecore