Identifying opportunities for dynamic circuit specialization

This work describes the identification of designs that benefit from a Dynamic Circuit Specialization (DCS) implementation on FPGAs. In DCS, the circuit is specialized for slowly changing inputs, called parameters. For certain applications or cores, a DCS implementation is faster and smaller than the original implementation. However, the best DCS implementation can be hard to identify, as it requires the designer to be familiar with both the design and DCS. In this paper, we present a profiling tool to aid the designer in analyzing the feasibility of a DCS implementation. It automatically provides a functional density estimate for the most interesting DCS implementations

Software/Hardware Tradeoffs in the Speedup of Color Image Processing Algorithms

Data parallel image processing algorithms have numerous uses in many real time applications. Depending on the complexity of the computations involved, these algorithms may take considerable amounts of time to complete. Since the algorithms are performed in real time, the end user is negatively impacted by the extended execution times. Fortunately, there are many different ways available in hardware and software to improve the speed of these algorithms. This thesis looks at several different methods of improving the speedup of color image processing algorithms and compares the tradeoffs among them. The methods for increasing the execution time of an algorithm include implementing Single Input Multiple Data (SIMD) instructions, using Posix threads to code across several processors, and using a stream based multichannel framework to implement the algorithms on an FPGA. Each of the above methods had advantages and disadvantages, yet all approaches were found to introduce a significant speedup over the single core baseline tests. These methods were completed on a number of different images to examine the effects of workload on the efficiency of the implementations. The application of these speedup techniques yielded excellent results leading to speedups of greater than 3.85 times in software and 5.8 times in hardware. In each of the software tests, the output image had a 2-d correlation coefficient (CORR2) of 1.0000. When implementing the algorithms in hardware using implementation specific approximations, the correlation coefficient of the output image was still an acceptable 0.99 or higher

The IPS fidelity scale as a guideline to implement Supported Employment

info:eu-repo/semantics/publishe

Doctor of Philosophy

dissertationWith the explosion of chip transistor counts, the semiconductor industry has struggled with ways to continue scaling computing performance in line with historical trends. In recent years, the de facto solution to utilize excess transistors has been to increase the size of the on-chip data cache, allowing fast access to an increased portion of main memory. These large caches allowed the continued scaling of single thread performance, which had not yet reached the limit of instruction level parallelism (ILP). As we approach the potential limits of parallelism within a single threaded application, new approaches such as chip multiprocessors (CMP) have become popular for scaling performance utilizing thread level parallelism (TLP). This dissertation identifies the operating system as a ubiquitous area where single threaded performance and multithreaded performance have often been ignored by computer architects. We propose that novel hardware and OS co-design has the potential to significantly improve current chip multiprocessor designs, enabling increased performance and improved power efficiency. We show that the operating system contributes a nontrivial overhead to even the most computationally intense workloads and that this OS contribution grows to a significant fraction of total instructions when executing several common applications found in the datacenter. We demonstrate that architectural improvements have had little to no effect on the performance of the OS over the last 15 years, leaving ample room for improvements. We specifically consider three potential solutions to improve OS execution on modern processors. First, we consider the potential of a separate operating system processor (OSP) operating concurrently with general purpose processors (GPP) in a chip multiprocessor organization, with several specialized structures acting as efficient conduits between these processors. Second, we consider the potential of segregating existing caching structures to decrease cache interference between the OS and application. Third, we propose that there are components within the OS itself that should be refactored to be both multithreaded and cache topology aware, which in turn, improves the performance and scalability of many-threaded applications

Hardware-conscious query processing for the many-core era

Die optimale Nutzung von moderner Hardware zur Beschleunigung von Datenbank-Anfragen ist keine triviale Aufgabe. Viele DBMS als auch DSMS der letzten Jahrzehnte basieren auf Sachverhalten, die heute kaum noch Gültigkeit besitzen. Ein Beispiel hierfür sind heutige Server-Systeme, deren Hauptspeichergröße im Bereich mehrerer Terabytes liegen kann und somit den Weg für Hauptspeicherdatenbanken geebnet haben. Einer der größeren letzten Hardware Trends geht hin zu Prozessoren mit einer hohen Anzahl von Kernen, den sogenannten Manycore CPUs. Diese erlauben hohe Parallelitätsgrade für Programme durch Multithreading sowie Vektorisierung (SIMD), was die Anforderungen an die Speicher-Bandbreite allerdings deutlich erhöht. Der sogenannte High-Bandwidth Memory (HBM) versucht diese Lücke zu schließen, kann aber ebenso wie Many-core CPUs jeglichen Performance-Vorteil negieren, wenn dieser leichtfertig eingesetzt wird. Diese Arbeit stellt die Many-core CPU-Architektur zusammen mit HBM vor, um Datenbank sowie Datenstrom-Anfragen zu beschleunigen. Es wird gezeigt, dass ein hardwarenahes Kostenmodell zusammen mit einem Kalibrierungsansatz die Performance verschiedener Anfrageoperatoren verlässlich vorhersagen kann. Dies ermöglicht sowohl eine adaptive Partitionierungs und Merge-Strategie für die Parallelisierung von Datenstrom-Anfragen als auch eine ideale Konfiguration von Join-Operationen auf einem DBMS. Nichtsdestotrotz ist nicht jede Operation und Anwendung für die Nutzung einer Many-core CPU und HBM geeignet. Datenstrom-Anfragen sind oft auch an niedrige Latenz und schnelle Antwortzeiten gebunden, welche von höherer Speicher-Bandbreite kaum profitieren können. Hinzu kommen üblicherweise niedrigere Taktraten durch die hohe Kernzahl der CPUs, sowie Nachteile für geteilte Datenstrukturen, wie das Herstellen von Cache-Kohärenz und das Synchronisieren von parallelen Thread-Zugriffen. Basierend auf den Ergebnissen dieser Arbeit lässt sich ableiten, welche parallelen Datenstrukturen sich für die Verwendung von HBM besonders eignen. Des Weiteren werden verschiedene Techniken zur Parallelisierung und Synchronisierung von Datenstrukturen vorgestellt, deren Effizienz anhand eines Mehrwege-Datenstrom-Joins demonstriert wird.Exploiting the opportunities given by modern hardware for accelerating query processing speed is no trivial task. Many DBMS and also DSMS from past decades are based on fundamentals that have changed over time, e.g., servers of today with terabytes of main memory capacity allow complete avoidance of spilling data to disk, which has prepared the ground some time ago for main memory databases. One of the recent trends in hardware are many-core processors with hundreds of logical cores on a single CPU, providing an intense degree of parallelism through multithreading as well as vectorized instructions (SIMD). Their demand for memory bandwidth has led to the further development of high-bandwidth memory (HBM) to overcome the memory wall. However, many-core CPUs as well as HBM have many pitfalls that can nullify any performance gain with ease. In this work, we explore the many-core architecture along with HBM for database and data stream query processing. We demonstrate that a hardware-conscious cost model with a calibration approach allows reliable performance prediction of various query operations. Based on that information, we can, therefore, come to an adaptive partitioning and merging strategy for stream query parallelization as well as finding an ideal configuration of parameters for one of the most common tasks in the history of DBMS, join processing. However, not all operations and applications can exploit a many-core processor or HBM, though. Stream queries optimized for low latency and quick individual responses usually do not benefit well from more bandwidth and suffer from penalties like low clock frequencies of many-core CPUs as well. Shared data structures between cores also lead to problems with cache coherence as well as high contention. Based on our insights, we give a rule of thumb which data structures are suitable to parallelize with focus on HBM usage. In addition, different parallelization schemas and synchronization techniques are evaluated, based on the example of a multiway stream join operation

SparkFlow : towards high-performance data analytics for Spark-based genome analysis

The recent advances in DNA sequencing technology triggered next-generation sequencing (NGS) research in full scale. Big Data (BD) is becoming the main driver in analyzing these large-scale bioinformatic data. However, this complicated process has become the system bottleneck, requiring an amalgamation of scalable approaches to deliver the needed performance and hide the deployment complexity. Utilizing cutting-edge scientific workflows can robustly address these challenges. This paper presents a Spark-based alignment workflow called SparkFlow for massive NGS analysis over singularity containers. SparkFlow is highly scalable, reproducible, and capable of parallelizing computation by utilizing data-level parallelism and load balancing techniques in HPC and Cloud environments. The proposed workflow capitalizes on benchmarking two state-of-art NGS workflows, i.e., BaseRecalibrator and ApplyBQSR. SparkFlow realizes the ability to accelerate large-scale cancer genomic analysis by scaling vertically (HyperThreading) and horizontally (provisions on-demand). Our result demonstrates a trade-off inevitably between the targeted applications and processor architecture. SparkFlow achieves a decisive improvement in NGS computation performance, throughput, and scalability while maintaining deployment complexity. The paper’s findings aim to pave the way for a wide range of revolutionary enhancements and future trends within the High-performance Data Analytics (HPDA) genome analysis realm.Postprin

A Co-Processor Approach for Efficient Java Execution in Embedded Systems

This thesis deals with a hardware accelerated Java virtual machine, named REALJava. The REALJava virtual machine is targeted for resource constrained embedded systems. The goal is to attain increased computational performance with reduced power consumption. While these objectives are often seen as trade-offs, in this context both of them can be attained simultaneously by using dedicated hardware. The target level of the computational performance of the REALJava virtual machine is initially set to be as fast as the currently available full custom ASIC Java processors. As a secondary goal all of the components of the virtual machine are designed so that the resulting system can be scaled to support multiple co-processor cores. The virtual machine is designed using the hardware/software co-design paradigm. The partitioning between the two domains is flexible, allowing customizations to the resulting system, for instance the floating point support can be omitted from the hardware in order to decrease the size of the co-processor core. The communication between the hardware and the software domains is encapsulated into modules. This allows the REALJava virtual machine to be easily integrated into any system, simply by redesigning the communication modules. Besides the virtual machine and the related co-processor architecture, several performance enhancing techniques are presented. These include techniques related to instruction folding, stack handling, method invocation, constant loading and control in time domain. The REALJava virtual machine is prototyped using three different FPGA platforms. The original pipeline structure is modified to suit the FPGA environment. The performance of the resulting Java virtual machine is evaluated against existing Java solutions in the embedded systems field. The results show that the goals are attained, both in terms of computational performance and power consumption. Especially the computational performance is evaluated thoroughly, and the results show that the REALJava is more than twice as fast as the fastest full custom ASIC Java processor. In addition to standard Java virtual machine benchmarks, several new Java applications are designed to both verify the results and broaden the spectrum of the tests.Siirretty Doriast

Identification of dynamic circuit specialization opportunities in RTL code

Dynamic Circuit Specialization (DCS) optimizes a Field-Programmable Gate Array (FPGA) design by assuming a set of its input signals are constant for a reasonable amount of time, leading to a smaller and faster FPGA circuit. When the signals actually change, a new circuit is loaded into the FPGA through runtime reconfiguration. The signals the design is specialized for are called parameters. For certain designs, parameters can be selected so the DCS implementation is both smaller and faster than the original implementation. However, DCS also introduces an overhead that is difficult for the designer to take into account, making it hard to determine whether a design is improved by DCS or not. This article presents extensive results on a profiling methodology that analyses Register-Transfer Level (RTL) implementations of applications to check if DCS would be beneficial. It proposes to use the functional density as a measure for the area efficiency of an implementation, as this measure contains both the overhead and the gains of a DCS implementation. The first step of the methodology is to analyse the dynamic behaviour of signals in the design, to find good parameter candidates. The overhead of DCS is highly dependent on this dynamic behaviour. A second stage calculates the functional density for each candidate and compares it to the functional density of the original design. The profiling methodology resulted in three implementations of a profiling tool, the DCS-RTL profiler. The execution time, accuracy, and the quality of each implementation is assessed based on data from 10 RTL designs. All designs, except for the two 16-bit adaptable Finite Impulse Response (FIR) filters, are analysed in 1 hour or less