A computational model of evolution: haploidy versus diploidy

In this paper, the study of diploidy is introduced like and important mechanism for memory reinforcement in artificial environments where adaptation is very important. The individuals of this ecosystem are able to genetically "learn" the best behaviour for survival. Critical changes, happening in the environmental conditions, require the presence of diploidy to ensure the survival of species. By means of new gene-dominance configurations, a way to shield the individuals from erroneous selection is provided. These two concepts appear like important elements for artificial systems which have to evolve in environments with some degree of instability.Publicad

Delayed Germination of Seeds: A Look at the Effects of Adult Longevity, the Timing of Reproduction, and Population Age/Stage Structure

The effects of adult longevity, the timing of reproduction, and population age/stage structure on the evolution of seed dormancy are explored in both constant and variable environment models. In the constant environment models complete germination is the evolutionarily stable strategy (ESS) regardless of adult longevity. Incorporating a cost of reproduction on subsequent survival does not alter this result. In contrast, in a variable environment changes in adult longevity can exert a strong selection pressure against seed dormancy. Incorporating a cost of reproduction for iteroparous species reduces adult longevity, which selects for more seed dormancy. The magnitude of the change in ESS germination probability depends on several factors, including which life-history stage is variable (e.g., fecundity, seedling survival), whether seeds can detect favorable sites for establishment, and the age/stage structure of the population. In general, increases in adult longevity select against seed dormancy, but exceptions to this pattern are discussed. The idea that established plant traits are uncoupled from those of the regenerative phase, as assumed by J. P. Grime's competition-stress-ruderal model, is considered critically

Evolution of size-dependent flowering in Onopordum illyricum: A quantitative assessment of the role of stochastic selection pressures

We explore the evolution of delayed, size-dependent reproduction in the monocarpic perennial Onopordum illyricum, using a range of mathematical models, parameterized with long-term field data. Analysis of the long-term data indicated that mortality, flowering, and growth were age and size dependent. Using mixed models, we estimated the variance about each of these relationships and also individual-specific effects. For the held populations, recruitment was the main density-dependent process, although there were weak effects of local density on growth and mortality Using parameterized growth models, which assume plants grow along a deterministic trajectory, we predict plants should flower at sizes approximately 50% smaller than observed in the field. We then develop a simple criterion, termed the "1-yr look-ahead criterion," based on equating seed production now with that of next year, allowing for mortality and growth, to determine at what size a plant should flower. This model allows the incorporation of variance about the growth function and individual-specific effects. The model predicts flowering at sizes approximately double that observed, indicating that variance about the growth curve selects for larger sizes at flowering. The 1-yr look-ahead approach is approximate because it ignores growth opportunities more than 1 yr ahead. To assess the accuracy of this approach, we develop a more complicated dynamic state variable model. Both models give similar results indicating the utility of the 1-yr look-ahead criterion. To allow for temporal variation in the model parameters, we used an individual-based model with a generic algorithm. This gave very accurate prediction of the observed flowering strategies. Sensitivity analysis of the model suggested that temporal variation in the parameters of the growth equation made waiting to flower more risky, so selected for smaller sizes at flowering. The models clearly indicate the need to incorporate stochastic variation in life-history analyses

Language: The missing selection pressure

Human beings are talkative. What advantage did their ancestors find in communicating so much? Numerous authors consider this advantage to be "obvious" and "enormous". If so, the problem of the evolutionary emergence of language amounts to explaining why none of the other primate species evolved anything even remotely similar to language. What I propose here is to reverse the picture. On closer examination, language resembles a losing strategy. Competing for providing other individuals with information, sometimes striving to be heard, makes apparently no sense within a Darwinian framework. At face value, language as we can observe it should never have existed or should have been counter-selected. In other words, the selection pressure that led to language is still missing. The solution I propose consists in regarding language as a social signaling device that developed in a context of generalized insecurity that is unique to our species. By talking, individuals advertise their alertness and their ability to get informed. This hypothesis is shown to be compatible with many characteristics of language that otherwise are left unexplained.Comment: 34 pages, 3 figure

Variation in habitat choice and delayed reproduction: Adaptive queuing strategies or individual quality differences?

In most species, some individuals delay reproduction or occupy inferior breeding positions. The queue hypothesis tries to explain both patterns by proposing that individuals strategically delay breeding (queue) to acquire better breeding or social positions. In 1995, Ens, Weissing, and Drent addressed evolutionarily stable queuing strategies in situations with habitat heterogeneity. However, their model did not consider the non - mutually exclusive individual quality hypothesis, which suggests that some individuals delay breeding or occupy inferior breeding positions because they are poor competitors. Here we extend their model with individual differences in competitive abilities, which are probably plentiful in nature. We show that including even the smallest competitive asymmetries will result in individuals using queuing strategies completely different from those in models that assume equal competitors. Subsequently, we investigate how well our models can explain settleme! nt patterns in the wild, using a long-term study on oystercatchers. This long-lived shorebird exhibits strong variation in age of first reproduction and territory quality. We show that only models that include competitive asymmetries can explain why oystercatchers' settlement patterns depend on natal origin. We conclude that predictions from queuing models are very sensitive to assumptions about competitive asymmetries, while detecting such differences in the wild is often problematic.

Spatial connectedness imposes local‐ and metapopulation‐level selection on life history through feedbacks on demography

Dispersal evolution impacts the fluxes of individuals and hence, connectivity in metapopulations. Connectivity is therefore decoupled from the structural connectedness of the patches within the spatial network. Because of demographic feedbacks, local selection also drives the evolution of other life history traits. We investigated how different levels of connectedness affect trait evolution in experimental metapopulations of the two-spotted spider mite. We separated local- and metapopulation-level selection and linked trait divergence to population dynamics. With lower connectedness, an increased starvation resistance and delayed dispersal evolved. Reproductive performance evolved locally by transgenerational plasticity or epigenetic processes. Costs of dispersal, but also changes in local densities and temporal fluctuations herein are found to be putative drivers. In addition to dispersal, demographic traits are able to evolve in response to metapopulation connectedness at both the local and metapopulation level by genetic and/or non-genetic inheritance. These trait changes impact the persistence of spatially structured populations

An In Silico Model to Simulate the Evolution of Biological Aging

Biological aging is characterized by an age-dependent increase in the probability of death and by a decrease in the reproductive capacity. Individual age-dependent rates of survival and reproduction have a strong impact on population dynamics, and the genetic elements determining survival and reproduction are under different selective forces throughout an organism lifespan. Here we develop a highly versatile numerical model of genome evolution --- both asexual and sexual --- for a population of virtual individuals with overlapping generations, where the genetic elements affecting survival and reproduction rate at different life stages are free to evolve due to mutation and selection. Our model recapitulates several emerging properties of natural populations, developing longer reproductive lifespan under stable conditions and shorter survival and reproduction in unstable environments. Faster aging results as the consequence of the reduced strength of purifying selection in more unstable populations, which have large portions of the genome that accumulate detrimental mutations. Unlike sexually reproducing populations under constant resources, asexually reproducing populations fail to develop an age-dependent increase in death rates and decrease in reproduction rates, therefore escaping senescence. Our model provides a powerful in silico framework to simulate how populations and genomes change in the context of biological aging and opens a novel analytical opportunity to characterize how real populations evolve their specific aging dynamics.Comment: 11 pages and 7 figures, written using the AIP distribution for REVTeX 4, Version 4.1 of REVTeX; corresponding author (D.R.V.) email: [email protected]

Change and Aging Senescence as an adaptation

Understanding why we age is a long-lived open problem in evolutionary biology. Aging is prejudicial to the individual and evolutionary forces should prevent it, but many species show signs of senescence as individuals age. Here, I will propose a model for aging based on assumptions that are compatible with evolutionary theory: i) competition is between individuals; ii) there is some degree of locality, so quite often competition will between parents and their progeny; iii) optimal conditions are not stationary, mutation helps each species to keep competitive. When conditions change, a senescent species can drive immortal competitors to extinction. This counter-intuitive result arises from the pruning caused by the death of elder individuals. When there is change and mutation, each generation is slightly better adapted to the new conditions, but some older individuals survive by random chance. Senescence can eliminate those from the genetic pool. Even though individual selection forces always win over group selection ones, it is not exactly the individual that is selected, but its lineage. While senescence damages the individuals and has an evolutionary cost, it has a benefit of its own. It allows each lineage to adapt faster to changing conditions. We age because the world changes.Comment: 19 pages, 4 figure