A unified framework for building ontological theories with application and testing in the field of clinical trials

The objective of this research programme is to contribute to the establishment of the emerging science of Formal Ontology in Information Systems via a collaborative project involving researchers from a range of disciplines including philosophy, logic, computer science, linguistics, and the medical sciences. The re­searchers will work together on the construction of a unified formal ontology, which means: a general framework for the construction of ontological theories in specific domains. The framework will be constructed using the axiomatic-deductive method of modern formal ontology. It will be tested via a series of applications relating to on-going work in Leipzig on medical taxonomies and data dictionaries in the context of clinical trials. This will lead to the production of a domain-specific ontology which is designed to serve as a basis for applications in the medical field

Towards development of fuzzy spatial datacubes : fundamental concepts with example for multidimensional coastal erosion risk assessment and representation

Les systèmes actuels de base de données géodécisionnels (GeoBI) ne tiennent généralement pas compte de l'incertitude liée à l'imprécision et le flou des objets; ils supposent que les objets ont une sémantique, une géométrie et une temporalité bien définies et précises. Un exemple de cela est la représentation des zones à risque par des polygones avec des limites bien définies. Ces polygones sont créés en utilisant des agrégations d'un ensemble d'unités spatiales définies sur soit des intérêts des organismes responsables ou les divisions de recensement national. Malgré la variation spatio-temporelle des multiples critères impliqués dans l’analyse du risque, chaque polygone a une valeur unique de risque attribué de façon homogène sur l'étendue du territoire. En réalité, la valeur du risque change progressivement d'un polygone à l'autre. Le passage d'une zone à l'autre n'est donc pas bien représenté avec les modèles d’objets bien définis (crisp). Cette thèse propose des concepts fondamentaux pour le développement d'une approche combinant le paradigme GeoBI et le concept flou de considérer la présence de l’incertitude spatiale dans la représentation des zones à risque. En fin de compte, nous supposons cela devrait améliorer l’analyse du risque. Pour ce faire, un cadre conceptuel est développé pour créer un model conceptuel d’une base de donnée multidimensionnelle avec une application pour l’analyse du risque d’érosion côtier. Ensuite, une approche de la représentation des risques fondée sur la logique floue est développée pour traiter l'incertitude spatiale inhérente liée à l'imprécision et le flou des objets. Pour cela, les fonctions d'appartenance floues sont définies en basant sur l’indice de vulnérabilité qui est un composant important du risque. Au lieu de déterminer les limites bien définies entre les zones à risque, l'approche proposée permet une transition en douceur d'une zone à une autre. Les valeurs d'appartenance de plusieurs indicateurs sont ensuite agrégées basées sur la formule des risques et les règles SI-ALORS de la logique floue pour représenter les zones à risque. Ensuite, les éléments clés d'un cube de données spatiales floues sont formalisés en combinant la théorie des ensembles flous et le paradigme de GeoBI. En plus, certains opérateurs d'agrégation spatiale floue sont présentés. En résumé, la principale contribution de cette thèse se réfère de la combinaison de la théorie des ensembles flous et le paradigme de GeoBI. Cela permet l’extraction de connaissances plus compréhensibles et appropriées avec le raisonnement humain à partir de données spatiales et non-spatiales. Pour ce faire, un cadre conceptuel a été proposé sur la base de paradigme GéoBI afin de développer un cube de données spatiale floue dans le system de Spatial Online Analytical Processing (SOLAP) pour évaluer le risque de l'érosion côtière. Cela nécessite d'abord d'élaborer un cadre pour concevoir le modèle conceptuel basé sur les paramètres de risque, d'autre part, de mettre en œuvre l’objet spatial flou dans une base de données spatiales multidimensionnelle, puis l'agrégation des objets spatiaux flous pour envisager à la représentation multi-échelle des zones à risque. Pour valider l'approche proposée, elle est appliquée à la région Perce (Est du Québec, Canada) comme une étude de cas.Current Geospatial Business Intelligence (GeoBI) systems typically do not take into account the uncertainty related to vagueness and fuzziness of objects; they assume that the objects have well-defined and exact semantics, geometry, and temporality. Representation of fuzzy zones by polygons with well-defined boundaries is an example of such approximation. This thesis uses an application in Coastal Erosion Risk Analysis (CERA) to illustrate the problems. CERA polygons are created using aggregations of a set of spatial units defined by either the stakeholders’ interests or national census divisions. Despite spatiotemporal variation of the multiple criteria involved in estimating the extent of coastal erosion risk, each polygon typically has a unique value of risk attributed homogeneously across its spatial extent. In reality, risk value changes gradually within polygons and when going from one polygon to another. Therefore, the transition from one zone to another is not properly represented with crisp object models. The main objective of the present thesis is to develop a new approach combining GeoBI paradigm and fuzzy concept to consider the presence of the spatial uncertainty in the representation of risk zones. Ultimately, we assume this should improve coastal erosion risk assessment. To do so, a comprehensive GeoBI-based conceptual framework is developed with an application for Coastal Erosion Risk Assessment (CERA). Then, a fuzzy-based risk representation approach is developed to handle the inherent spatial uncertainty related to vagueness and fuzziness of objects. Fuzzy membership functions are defined by an expert-based vulnerability index. Instead of determining well-defined boundaries between risk zones, the proposed approach permits a smooth transition from one zone to another. The membership values of multiple indicators (e.g. slop and elevation of region under study, infrastructures, houses, hydrology network and so on) are then aggregated based on risk formula and Fuzzy IF-THEN rules to represent risk zones. Also, the key elements of a fuzzy spatial datacube are formally defined by combining fuzzy set theory and GeoBI paradigm. In this regard, some operators of fuzzy spatial aggregation are also formally defined. The main contribution of this study is combining fuzzy set theory and GeoBI. This makes spatial knowledge discovery more understandable with human reasoning and perception. Hence, an analytical conceptual framework was proposed based on GeoBI paradigm to develop a fuzzy spatial datacube within Spatial Online Analytical Processing (SOLAP) to assess coastal erosion risk. This necessitates developing a framework to design a conceptual model based on risk parameters, implementing fuzzy spatial objects in a spatial multi-dimensional database, and aggregating fuzzy spatial objects to deal with multi-scale representation of risk zones. To validate the proposed approach, it is applied to Perce region (Eastern Quebec, Canada) as a case study

Ontological Foundations for Geographic Information Science

We propose as a UCGIS research priority the topic of “Ontological Foundations for Geographic Information.” Under this umbrella we unify several interrelated research subfields, each of which deals with different perspectives on geospatial ontologies and their roles in geographic information science. While each of these subfields could be addressed separately, we believe it is important to address ontological research in a unitary, systematic fashion, embracing conceptual issues concerning what would be required to establish an exhaustive ontology of the geospatial domain, issues relating to the choice of appropriate methods for formalizing ontologies, and considerations regarding the design of ontology-driven information systems. This integrated approach is necessary, because there is a strong dependency between the methods used to specify an ontology, and the conceptual richness, robustness and tractability of the ontology itself. Likewise, information system implementations are needed as testbeds of the usefulness of every aspect of an exhaustive ontology of the geospatial domain. None of the current UCGIS research priorities provides such an integrative perspective, and therefore the topic of “Ontological Foundations for Geographic Information Science” is unique

Spatial database implementation of fuzzy region connection calculus for analysing the relationship of diseases

Analyzing huge amounts of spatial data plays an important role in many emerging analysis and decision-making domains such as healthcare, urban planning, agriculture and so on. For extracting meaningful knowledge from geographical data, the relationships between spatial data objects need to be analyzed. An important class of such relationships are topological relations like the connectedness or overlap between regions. While real-world geographical regions such as lakes or forests do not have exact boundaries and are fuzzy, most of the existing analysis methods neglect this inherent feature of topological relations. In this paper, we propose a method for handling the topological relations in spatial databases based on fuzzy region connection calculus (RCC). The proposed method is implemented in PostGIS spatial database and evaluated in analyzing the relationship of diseases as an important application domain. We also used our fuzzy RCC implementation for fuzzification of the skyline operator in spatial databases. The results of the evaluation show that our method provides a more realistic view of spatial relationships and gives more flexibility to the data analyst to extract meaningful and accurate results in comparison with the existing methods.Comment: ICEE201

Technology Integration around the Geographic Information: A State of the Art

One of the elements that have popularized and facilitated the use of geographical information on a variety of computational applications has been the use of Web maps; this has opened new research challenges on different subjects, from locating places and people, the study of social behavior or the analyzing of the hidden structures of the terms used in a natural language query used for locating a place. However, the use of geographic information under technological features is not new, instead it has been part of a development and technological integration process. This paper presents a state of the art review about the application of geographic information under different approaches: its use on location based services, the collaborative user participation on it, its contextual-awareness, its use in the Semantic Web and the challenges of its use in natural languge queries. Finally, a prototype that integrates most of these areas is presented

Construcción de un sistema de información y de ayuda a la decisión mediante lógica difusa para el cultivo del olivar en Andalucía

In Southern Spain, olive (Olea europaea L.) growing is an important part of the economy, especially in the provinces of Jaén, Córdoba and Granada. This work proposes the first stages of an Information and Decision-Support System (IDSS) for providing different types of users (farmers, agricultural engineers, public services, etc.) with information on olive growing and the environment, and also assisting in decision-making. The main purposes of the project reported in this paper are to process uncertain or imprecise data, such as those concerning the environment or crops, and combine user data with other scientific-experimental data. The possibility of storing agricultural and ecological information in fuzzy relational databases, vital to the development of an IDSS is described. The information will be processed using knowledge extraction tools (fuzzy data-mining) that will allow rules on expert knowledge for assessing suitability of land to be developed and making thematic maps with the aid of Geographic Information Systems. Flexible querying will allow the users to collect information interactively from databases, while user information is constantly added. Flexible querying of databases, land suitability and thematic maps may be used to help in decisionmaking.El cultivo del olivo (Olea europaea L.) tiene una enorme importancia económica en la zona sur de España y concretamente en las provincias de Jaén, Córdoba y Granada. En este trabajo se propone la construcción de un sistema de información y ayuda a la toma de decisión (IDSS) que permita en el futuro a distintos tipos de usuarios (agricultores, agrónomos, administraciones públicas, etc.) obtener y manejar información sobre el cultivo de olivar y el soporte ambiental del mismo, así como ayudar en la toma de decisiones. Los principales objetivos desarrollados en este trabajo son el tratamiento de datos inciertos e imprecisos, como es el caso de la información ambiental y sobre cultivos, y la fusión de datos sobre cultivo y otros de carácter científico-experimental. Se describe la posibilidad de almacenar la información de carácter agronómico y ecológico en bases de datos relacionales, que es vital para el desarrollo de un IDSS. La información será procesada a través de herramientas de extracción de conocimiento (minería de datos difusa) y permitirá sobre la base del conocimiento experto el desarrollo de reglas para la clasificación de aptitud del terreno y para la obtención de mapas temáticos con la ayuda de Sistemas de Información Geográfica. La consulta flexible permitirá a los distintos usuarios la consulta interactiva de toda la información almacenada en las bases de datos, así como una implementación constante de las mismas. La consulta flexible de bases de datos, la idoneidad de los terrenos y los mapas temáticos pueden ser de gran utilidad en la toma de decisiones.This work is part of the research projects 1FD97-0244-CO3-2 (financed with FEDER funds) and CGL2004-02282BTE (Spanish Ministry of Education and Science)

Towards a typology of spatial relations and properties for urban applications

Relations that occur between features located in space–like the fact that a street is surrounded by very high buildings, that an airport is close to a city- as well as spatial properties of features–like the height and width of a door- play an important role for many urban applications. Digital models of cities can assist in the evaluation of these relations and properties either through visualisation or through computation, mainly based on geometrical information. Hence, considering the objective of explaining to potential users of these city models what useful information they can derive from these data and how, a possible way to address this objective lies in the usage of a pivot model composed of relevant spatial properties and relations, connected to information meaningful to the user and connected to the possible computation of them on available data. This paper firstly sets the ground for a typology of such relevant relations and properties that are shared by different applications and that can be derived/approximated from existing data. It then proposes a model to describe these properties and relations and connect them to their possible computation based on data (2D or 3D). An important aspect of this model is to distinguish between a conceptual layer where relations occur between “real world” features and an implementation layer where they are calculated based on database features and geometries