Unmanned Aerial Vehicles (UAVs) in environmental biology: A Review

Acquiring information about the environment is a key step during each study in the field of environmental biology at different levels, from an individual species to community and biome. However, obtaining information about the environment is frequently difficult because of, for example, the phenological timing, spatial distribution of a species or limited accessibility of a particular area for the field survey. Moreover, remote sensing technology, which enables the observation of the Earth’s surface and is currently very common in environmental research, has many limitations such as insufficient spatial, spectral and temporal resolution and a high cost of data acquisition. Since the 1990s, researchers have been exploring the potential of different types of unmanned aerial vehicles (UAVs) for monitoring Earth’s surface. The present study reviews recent scientific literature dealing with the use of UAV in environmental biology. Amongst numerous papers, short communications and conference abstracts, we selected 110 original studies of how UAVs can be used in environmental biology and which organisms can be studied in this manner. Most of these studies concerned the use of UAV to measure the vegetation parameters such as crown height, volume, number of individuals (14 studies) and quantification of the spatio-temporal dynamics of vegetation changes (12 studies). UAVs were also frequently applied to count birds and mammals, especially those living in the water. Generally, the analytical part of the present study was divided into following sections: (1) detecting, assessing and predicting threats on vegetation, (2) measuring the biophysical parameters of vegetation, (3) quantifying the dynamics of changes in plants and habitats and (4) population and behaviour studies of animals. At the end, we also synthesised all the information showing, amongst others, the advances in environmental biology because of UAV application. Considering that 33% of studies found and included in this review were published in 2017 and 2018, it is expected that the number and variety of applications of UAVs in environmental biology will increase in the future

FINE SCALE MAPPING OF LAURENTIAN MIXED FOREST NATURAL HABITAT COMMUNITIES USING MULTISPECTRAL NAIP AND UAV DATASETS COMBINED WITH MACHINE LEARNING METHODS

Natural habitat communities are an important element of any forest ecosystem. Mapping and monitoring Laurentian Mixed Forest natural communities using high spatial resolution imagery is vital for management and conservation purposes. This study developed integrated spatial, spectral and Machine Learning (ML) approaches for mapping complex vegetation communities. The study utilized ultra-high and high spatial resolution National Agriculture Imagery Program (NAIP) and Unmanned Aerial Vehicle (UAV) datasets, and Digital Elevation Model (DEM). Complex natural vegetation community habitats in the Laurentian Mixed Forest of the Upper Midwest. A detailed workflow is presented to effectively process UAV imageries in a dense forest environment where the acquisition of ground control points (GCPs) is extremely difficult. Statistical feature selection methods such as Joint Mutual Information Maximization (JMIM) which is not that widely used in the natural resource field and variable importance (varImp) were used to discriminate spectrally similar habitat communities. A comprehensive approach to training set delineation was implemented including the use of Principal Components Analysis (PCA), Independent Components Analysis (ICA), soils data, and expert image interpretation. The developed approach resulted in robust training sets to delineate and accurately map natural community habitats. Three ML algorithms were implemented Random Forest (RF), Support Vector Machine (SVM), and Averaged Neural Network (avNNet). RF outperformed SVM and avNNet. Overall RF accuracies across the three study sites ranged from 79.45-87.74% for NAIP and 87.31-93.74% for the UAV datasets. Different ancillary datasets including spectral enhancement and image transformation techniques (PCA and ICA), GLCM-Texture, spectral indices, and topography features (elevation, slope, and aspect) were evaluated using the JMIM and varImp feature selection methods, overall accuracy assessment, and kappa calculations. The robustness of the workflow was evaluated with three study sites which are geomorphologically unique and contain different natural habitat communities. This integrated approach is recommended for accurate natural habitat community classification in ecologically complex landscapes

Data and resolution requirements in mapping vegetation in spatially heterogeneous landscapes

Peer reviewe

Using uncrewed aerial vehicles for identifying the extent of invasive phragmites australis in treatment areas enrolled in an adaptive management program

Higher spatial and temporal resolutions of remote sensing data are likely to be useful for ecological monitoring efforts. There are many different treatment approaches for the introduced European genotype of Phragmites australis, and adaptive management principles are being integrated in at least some long-term monitoring efforts. In this paper, we investigated how natural color and a smaller set of near-infrared (NIR) images collected with low-cost uncrewed aerial vehicles (UAVs) could help quantify the aboveground effects of management efforts at 20 sites enrolled in the Phragmites Adaptive Management Framework (PAMF) spanning the coastal Laurentian Great Lakes region. We used object-based image analysis and field ground truth data to classify the Phragmites and other cover types present at each of the sites and calculate the percent cover of Phragmites, including whether it was alive or dead, in the UAV images. The mean overall accuracy for our analysis with natural color data was 91.7% using four standardized classes (Live Phragmites, Dead Phragmites, Other Vegetation, Other Non-vegetation). The Live Phragmites class had a mean user’s accuracy of 90.3% and a mean producer’s accuracy of 90.1%, and the Dead Phragmites class had a mean user’s accuracy of 76.5% and a mean producer’s accuracy of 85.2% (not all classes existed at all sites). These results show that UAV-based imaging and object-based classification can be a useful tool to measure the extent of dead and live Phragmites at a series of sites undergoing management. Overall, these results indicate that UAV sensing appears to be a useful tool for identifying the extent of Phragmites at management sites

Applications of Photogrammetry for Environmental Research

ISPRS International Journal of Geo-Information: special issue entitled "Applications of Photogrammetry for Environmental Research

Vegetation Dynamics in Ecuador

Global forest cover has suffered a dramatic reduction during recent decades, especially in tropical regions, which is mainly due to human activities caused by enhanced population pressures. Nevertheless, forest ecosystems, especially tropical forests, play an important role in the carbon cycle functioning as carbon stocks and sinks, which is why conservation strategies are of utmost importance respective to ongoing global warming. In South America the highest deforestation rates are observed in Ecuador, but an operational surveillance system for continuous forest monitoring, along with the determination of deforestation rates and the estimation of actual carbon socks is still missing. Therefore, the present investigation provides a functional tool based on remote sensing data to monitor forest stands at local, regional and national scales. To evaluate forest cover and deforestation rates at country level satellite data was used, whereas LiDAR data was utilized to accurately estimate the Above Ground Biomass (AGB; carbon stocks) at catchment level. Furthermore, to provide a cost-effective tool for continuous forest monitoring of the most vulnerable parts, an Unmanned Aerial Vehicle (UAV) was deployed and equipped with various sensors (RBG and multispectral camera). The results showed that in Ecuador total forest cover was reduced by about 24% during the last three decades. Moreover, deforestation rates have increased with the beginning of the new century, especially in the Andean Highland and the Amazon Basin, due to enhanced population pressures and the government supported oil and mining industries, besides illegal timber extractions. The AGB stock estimations at catchment level indicated that most of the carbon is stored in natural ecosystems (forest and páramo; AGB ~98%), whereas areas affected by anthropogenic land use changes (mostly pastureland) lost nearly all their storage capacities (AGB ~2%). Furthermore, the LiDAR data permitted the detection of the forest structure, and therefore the identification of the most vulnerable parts. To monitor these areas, it could be shown that UAVs are useful, particularly when equipped with an RGB camera (AGB correlation: R² > 0.9), because multispectral images suffer saturation of the spectral bands over dense natural forest stands, which results in high overestimations. In summary, the developed operational surveillance systems respective to forest cover at different spatial scales can be implemented in Ecuador to promote conservation/ restoration strategies and to reduce the high deforestation rates. This may also mitigate future greenhouse gas emissions and guarantee functional ecosystem services for local and regional populations

Classification of Drainage Crossings on high-resolution digital elevation models: A deep learning approach

High-Resolution Digital Elevation Models (HRDEMs) have been used to delineate fine-scale hydrographic features in landscapes with relatively level topography. However, artificial flow barriers associated with roads are known to cause incorrect modeled flowlines, because these barriers substantially increase the terrain elevation and often terminate flowlines. A common practice is to breach the elevation of roads near drainage crossing locations, which, however, are often unavailable. Thus, developing a reliable drainage crossing dataset is essential to improve the HRDEMs for hydrographic delineation. The purpose of this research is to develop deep learning models for classifying the images that contain the locations of flow barriers. Based on HRDEMs and aerial orthophotos, different Convolutional Neural Network (CNN) models were trained and compared to assess their effectiveness in image classification in four different watersheds across the U.S. Midwest. Our results show that most deep learning models can consistently achieve over 90% accuracies. The CNN model with HRDEMs as the sole input feature was found to be the best-fit one. The addition of aerial orthophotos and their derived spectral indices is insignificant to or even worsens the model’s accuracy. The selected best-fit model exhibits excellent transferability over different geographic contexts. This work can be applied to improve elevation-derived hydrography mapping at fine spatial scales

An improved algorithm for identifying shallow and deep-seated landslides in dense tropical forest from airborne laser scanning data

© 2018 Landslides are natural disasters that cause environmental and infrastructure damage worldwide. They are difficult to be recognized, particularly in densely vegetated regions of the tropical forest areas. Consequently, an accurate inventory map is required to analyze landslides susceptibility, hazard, and risk. Several studies were done to differentiate between different types of landslide (i.e. shallow and deep-seated); however, none of them utilized any feature selection techniques. Thus, in this study, three feature selection techniques were used (i.e. correlation-based feature selection (CFS), random forest (RF), and ant colony optimization (ACO)). A fuzzy-based segmentation parameter (FbSP optimizer) was used to optimize the segmentation parameters. Random forest (RF) was used to evaluate the performance of each feature selection algorithms. The overall accuracies of the RF classifier revealed that CFS algorithm exhibited higher ranks in differentiation landslide types. Moreover, the results of the transferability showed that this method is easy, accurate, and highly suitable for differentiating between types of landslides (shallow and deep-seated). In summary, the study recommends that the outlined approaches are significant to improve in distinguishing between shallow and deep-seated landslide in the tropical areas, such as; Malaysia