The Age of the Soybean

The soybean is far more than just a versatile crop whose derivates serve the protein needs of a meatless diet. One of the world’s most important commodities, soy represents the embodiment of mechanised industrial agriculture and is one of the main actors behind the socioeconomic, political and ecological transformations of industrial farming in several world regions. Despite the crop’s potential as a cheap source of vegetal protein for human consumers, most industrial soybean production has fuelled the global meat industrial complex, as animal feed. Soybean is thus, paradoxically, still a relatively ‘invisible’ crop to the public at large, although its global yields continue to increase at stupendous rates, lining the pockets of agribusiness and to the detriment of traditional agriculture. The transnational socio-ecological and economic entanglements characterising this versatile legume’s global expansion have prompted scholarly attention as researchers around the world have begun to unveil the main historical drivers behind the rise of the soybean in the global food chain. This book aims to expand the analysis, offering the most significant effort so far at an environmental history of soybeans. Interrogating the socioeconomic and ecological transformations determined by (and determining) the rise of soy in international food chains during the Great Acceleration, the volume gathers contributions from an international cast of researchers, working in numerous geographical contexts, from Japan and China, to India, African nations, the Southern Cone of Latin America, Northern Europe and the United States. Soybean farming, breeding, processing and marketing have bound together the histories of these diverse regions and altered beyond recognition their ecological and socio-economic contexts

The Age of the Soybean

The soybean is far more than just a versatile crop whose derivates serve the protein needs of a meatless diet. One of the world’s most important commodities, soy represents the embodiment of mechanised industrial agriculture and is one of the main actors behind the socioeconomic, political and ecological transformations of industrial farming in several world regions. Despite the crop’s potential as a cheap source of vegetal protein for human consumers, most industrial soybean production has fuelled the global meat industrial complex, as animal feed. Soybean is thus, paradoxically, still a relatively ‘invisible’ crop to the public at large, although its global yields continue to increase at stupendous rates, lining the pockets of agribusiness and to the detriment of traditional agriculture. The transnational socio-ecological and economic entanglements characterising this versatile legume’s global expansion have prompted scholarly attention as researchers around the world have begun to unveil the main historical drivers behind the rise of the soybean in the global food chain. This book aims to expand the analysis, offering the most significant effort so far at an environmental history of soybeans. Interrogating the socioeconomic and ecological transformations determined by (and determining) the rise of soy in international food chains during the Great Acceleration, the volume gathers contributions from an international cast of researchers, working in numerous geographical contexts, from Japan and China, to India, African nations, the Southern Cone of Latin America, Northern Europe and the United States. Soybean farming, breeding, processing and marketing have bound together the histories of these diverse regions and altered beyond recognition their ecological and socio-economic contexts

Applying satellite remote sensing, unmanned systems, and models for water quality analysis

Transport of soils and sediment by runoff diminish the surface water quality of lakes/reservoirs and shrink reservoir capacity. Nutrients move with transported soil and sediment due to soil erosion by floods and high wind. Nutrients from land management practices such as farming, animal feeding operations, and wastewater treatment stimulate the growth of cyanobacteria in surface water bodies. Excessive nutrient loading or eutrophication with favorable hydrodynamics result in excessive growth of cyanobacteria called Harmful Algal Blooms (HABs). These cyanobacteria sometimes release microcystins which are toxic to humans when consumed. The biological decay of HABs cause ecological dead zones due to depletion of dissolved oxygen while reducing the utility of the reservoirs. From an ecosystem service provision and human health perspective, HABs represent a great water quality threat.Therefore monitoring and modeling the formation of HABs in surface water bodies is important. In freshwater reservoirs of Oklahoma and Kansas, HAB formations and occurrences have increased due to floods, agricultural practices, and rising earth temperatures due to global warming and climate change. In Oklahoma, Grand Lake O' the Cherokees (Grand Lake) had experienced a severe HAB outbreak in 2011. In Kansas, Marion reservoir experiences HAB formation almost every year. These two reservoirs provide an opportunity to study and understand HAB formation, predict them and provide warning advisories. All the in-situ data collected using unmanned systems in the freshwater reservoirs have been used to develop water quality and watershed models to understand the relationship between sediment, nutrient loadings and HAB formations

by integrating deep learning, mechanistic model and field observations

학위논문(박사) -- 서울대학교대학원 : 농업생명과학대학 협동과정 농림기상학, 2022. 8. Youngryel Ryu.Rice (Oryza sativa) is a vital cereal crop that feeds more than 50% of the world population. However, the traditional anaerobic management leads rice production to consume ~40% of the irrigation water and emit ~10% of the global anthropogenic methane. A new paradigm for sustainable rice farming is urgently required amid challenges from increasing food demand, water scarcity, and reducing greenhouse gases emissions. Rice plants transpire considerable water overnight. Saving nighttime water loss is desirable but first need to understand the underlying mechanism of nocturnal stomatal opening. Apart from the night, optimizing daytime management is pivotal for designing an environmentally sustainable rice farming system. In a long-term strategy, detailed and reliable crop type map is compulsory to upscale new leaf level findings and site level methods to regional or global scale. Therefore, in this dissertation, we improved mechanistic understanding of nocturnal stomatal conductance in rice plants (Chapter II); provided an interdisciplinary and heuristic approach for designing an environmentally sustainable rice farming system with a case study in South Korea (Chapter III); and developed a new crop type referencing method by mining off-the-shelf Google Street View images to map crop types (Chapter IV). In chapter II, we proposed a “coordinated leaf trait” hypothesis to explain the ecological mechanism of nocturnal stomatal conductance (gsn) in rice. We conducted an open-field experiment by applying drought, nutrient deficiency, and the combined drought-nutrient deficiency stress. We found that gsn was neither strongly reduced by drought nor consistently increased by nutrient deficiency. With abiotic stress as a random effect, gsn was strongly positively correlated with nocturnal respiration (Rn). Notably, gsn primed early morning photosynthesis, as follows: Rn (↑) → gsn (↑) → gsd (daytime stomatal conductance) (↑) → A (assimilation) (↑). This photosynthesis priming effect diminished after mid-morning. Leaves were cooled by gsn as follows: gsn (↑) → E (transpiration) (↑) → Tleaf (leaf temperature) (↓). However, our results clearly suggest that evaporative cooling did not reduce Rn cost. Our results indicate that gsn is more closely related to carbon respiration and assimilation than water and nutrient availability, and that leaf trait coordination (Rn − gsn − gsd − A) is likely the primary mechanism controlling gsn. In chapter III, we aimed to increase current crop yield, reduce irrigation water consumption, and tackle the dilemma to simultaneously reducing CH4 and N2O emissions in a flooded rice production system. By proposing a heuristic and holistic method, we optimized farm management beyond previous most emphasized irrigation regimes while also exploring niches from other pivotal options regarding sowing window, fertilization rate, tillage depth, and their interactions. Specifically, we calibrated and validated the process-based DNDC model with five years of eddy covariance observations. The DNDC model later was integrated with the non-dominated sorting genetic algorithm (NSGA-III) to solve the multi-objective optimization problem. We found that the optimized management would maintain or even increase current crop yield to its potential (~10 t/ha) while reducing more than 50% irrigation demand and GHGs (CH4 & N2O) emissions. Our results indicate that earlier sowing window and improvements on irrigation practice together would be pivotal to maximizing crop yield while sustaining environmental benefits. We found that the optimal fraction of non-flooded days was around 54% of growing season length and its optimal temporal distributions were primarily in vegetative stages. Our study shows that the present farm yield (8.3-8.9 t/ha) in study site not only has not achieved its potential level but also comes at a great environmental cost to water resources (604-810 mm/yr) and GHGs emissions (CH4: 186-220 kg C/ha/yr; N2O: 0.3-1.6 kg C/ha/yr). Furthermore, this simple method could further be applied to evaluate the environmental sustainability of a farming system under various climate and local conditions and to guide policymakers and farming practices with comprehensive solutions. In chapter IV, we apply a convolutional neural network (CNN) model to explore the efficacy of automatic ground truthing via Google Street View (GSV) images in two distinct farming regions: Illinois and the Central Valley in California. Ground reference data are an essential prerequisite for supervised crop mapping. The lack of a low-cost and efficient ground referencing method results in pervasively limited reference data and hinders crop classification. In this study, we demonstrate the feasibility and reliability of our new ground referencing technique by performing pixel-based crop mapping at the state level using the cloud-based Google Earth Engine platform. The mapping results are evaluated using the United States Department of Agriculture (USDA) crop data layer (CDL) products. From ~130,000 GSV images, the CNN model identified ~9,400 target crop images. These images are well classified into crop types, including alfalfa, almond, corn, cotton, grape, rice, soybean, and pistachio. The overall GSV image classification accuracy is 92% for the Central Valley and 97% for Illinois. Subsequently, we shifted the image geographical coordinates 2–3 times in a certain direction to produce 31,829 crop reference points: 17,358 in Illinois, and 14,471 in the Central Valley. Evaluation of the mapping results with CDL products revealed satisfactory coherence. GSV-derived mapping results capture the general pattern of crop type distributions for 2011–2019. The overall agreement between CDL products and our mapping results is indicated by R2 values of 0.44–0.99 for the Central Valley and 0.81–0.98 for Illinois. To show the applicational value of the proposed method in other countries, we further mapped rice paddy (2014–2018) in South Korea which yielded fairly well outcomes (R2=0.91). These results indicate that GSV images used with a deep learning model offer an efficient and cost-effective alternative method for ground referencing, in many regions of the world.쌀(오리자 사티바)은 세계 인구의 50% 이상을 먹여 살리는 중요한 곡물 작물이다. 그러나 전통적인 혐기성 관리는 쌀 생산으로 관개수의 40%를 소비하고 전 세계 인공 메탄의 10%를 배출한다. 식량 수요 증가, 물 부족, 온실가스 배출 감소 등의 과제 속에서 지속 가능한 벼농사를 위한 새로운 패러다임이 시급하다. 벼는 하룻밤 사이에 상당한 양의 물을 내뿜는다. 야간 수분 손실을 줄이는 것은 바람직하지만, 먼저 야간 기공 개방의 기본 메커니즘을 이해할 필요가 있다. 야간과 별도로 주간 경영의 최적화는 환경적으로 지속 가능한 벼농사 시스템을 설계하는 데 매우 중요하다. 장기 전략에서, 새로운 잎 수준 발견과 현장 수준 방법을 지역적 또는 전역적 규모로 상향 조정하려면 상세하고 신뢰할 수 있는 작물 유형 맵이 필수적이다. 따라서, 본 논문에서 우리는 벼농사의 야간 기공 전도도에 대한 기계적 이해를 향상시켰다(제2장). 환경적으로 지속 가능한 벼농사 시스템을 설계하기 위한 학제 간 및 휴리스틱 접근법 제공(제3장). 그리고 새로운 작물 유형 참조 방법을 개발했다. 기성품인 Google Street View 이미지를 마이닝하여 자르기 유형을 매핑합니다. 2장에서 우리는 벼의 야행성 기공 전도도(gsn)의 생태학적 메커니즘을 설명하기 위해 "협동된 잎 형질" 가설을 제안했습니다. 가뭄, 영양 결핍 및 가뭄-영양소 결핍 복합 스트레스를 적용하여 노지 실험을 수행했습니다. 우리는 gsn이 가뭄에 의해 크게 감소하지도 않고 영양 결핍에 의해 지속적으로 증가하지도 않는다는 것을 발견했습니다. 무생물적 스트레스를 무작위 효과로 사용하여 gsn은 야간 호흡(Rn)과 강한 양의 상관관계를 보였습니다. 특히, gsn은 Rn(↑) → gsn(↑) → gsd(주간 기공 전도도)(↑) → A(동화)(↑)와 같이 이른 아침 광합성을 프라이밍했습니다. 이 광합성 프라이밍 효과는 오전 중반 이후에 감소했습니다. 잎은 gsn에 의해 다음과 같이 냉각되었습니다: gsn(↑) → E(증산)(↑) → Tleaf(잎 온도)(↓). 그러나 우리의 결과는 증발 냉각이 Rn 비용을 감소시키지 않았다는 것을 분명히 시사합니다. 우리의 결과는 gsn이 물 및 영양소 가용성보다 탄소 호흡 및 동화와 더 밀접하게 관련되어 있으며 잎 형질 조정(Rn - gsn - gsd - A)이 gsn을 제어하는 주요 메커니즘일 가능성이 있음을 나타냅니다. 제3장에서 우리는 현재의 작물 수확량을 늘리고 관개 용수 소비를 줄이며 침수된 쌀 생산 시스템에서 CH4와 N2O 배출량을 동시에 줄이는 딜레마를 해결하는 것을 목표로 했다. 휴리스틱하고 전체론적 방법을 제안함으로써, 우리는 이전에 가장 강조되었던 관개 체제를 넘어 농장 관리를 최적화함과 동시에 파종 창, 수정률, 경작 깊이 및 이들의 상호 작용과 관련된 다른 중추적 옵션의 틈새를 탐색했다. 구체적으로, 우리는 5년간의 와류 공분산 관찰로 프로세스 기반 DNDC 모델을 교정하고 검증했다. DNDC 모델은 나중에 다중 객관적 최적화 문제를 해결하기 위해 비지배적 정렬 유전 알고리듬(NSGA-III)과 통합되었다. 우리는 최적화된 관리를 통해 50% 이상의 관개 수요와 GHG(CH4 & N2O) 배출량을 줄이면서 현재 농작물 수확량을 잠재력(~10t/ha)까지 유지하거나 증가시킬 수 있다는 것을 발견했습니다. 우리의 결과는 더 이른 파종 기간과 관개 관개 관행의 개선이 환경적 이익을 유지하면서 농작물 수확량을 최대화하는 데 중추적일 것이라는 것을 보여준다. 우리는 홍수 없는 날의 최적 부분이 성장기 길이의 약 54%였고 최적의 시간 분포는 주로 식물 단계에 있다는 것을 발견했다. 우리의 연구는 연구 현장의 현재 농장 수확량(8.3-8.9 t/ha)이 잠재적 수준을 달성했을 뿐만 아니라 수자원(604-810 mm/yr)과 GHGs 배출(CH4: 186-220 kg C/ha/yr; N2O: 0.3-1.6 kg C/ha/yr)에 막대한 환경 비용을 초래한다는 것을 보여준다. 또한, 이 간단한 방법은 다양한 기후 및 지역 조건 하에서 농업 시스템의 환경 지속 가능성을 평가하고 정책 입안자와 농업 관행을 포괄적인 해결책으로 안내하는 데 추가로 적용될 수 있다. 제4장에서는 컨볼루션 신경망(CNN) 모델을 적용하여 두 개의 구별되는 농업 지역에서 구글 스트리트 뷰(GSV) 이미지를 통해 자동 지상 트러싱의 효과를 탐구한다. 일리노이와 캘리포니아의 센트럴 밸리. 지상 참조 데이터는 감독된 작물 매핑을 위한 필수 전제 조건이다. 저렴하고 효율적인 지상 참조 방법이 없기 때문에 참조 데이터가 광범위하게 제한되고 작물 분류를 방해한다. 본 연구에서는 클라우드 기반 Google 어스 엔진 플랫폼을 사용하여 상태 수준에서 픽셀 기반 크롭 매핑을 수행하여 새로운 지상 참조 기술의 실현 가능성과 신뢰성을 입증한다. 매핑 결과는 미국 농무부(USDA) 작물 데이터층(CDL) 제품을 사용하여 평가된다. 약 130,000개의 GSV 이미지에서 CNN 모델은 약 9,400개의 목표 크롭 이미지를 식별했다. 이 이미지들은 알팔파, 아몬드, 옥수수, 면화, 포도, 쌀, 콩, 피스타치오 등의 작물 유형으로 잘 분류된다. 전체 GSV 이미지 분류 정확도는 센트럴 밸리의 경우 92%, 일리노이 주의 경우 97%이다. 그 후 이미지 지리적 좌표를 특정 방향으로 2~3회 이동하여 31,829개의 크롭 기준점을 생성했다. 즉, 일리노이에서 17,358개, 센트럴 밸리에서 14,471개였다. CDL 제품으로 매핑 결과를 평가한 결과 만족스러운 일관성이 나타났다. GSV에서 파생된 매핑 결과는 2011-2019년 작물 유형 분포의 일반적인 패턴을 포착한다. CDL 제품과 우리의 매핑 결과 사이의 전체 합치는 센트럴 밸리의 경우 0.44–0.99의 R2 값과 일리노이 주의 경우 0.81–0.98의 R2 값으로 표시된다. 제안된 방법의 다른 국가에서 적용 가치를 보여주기 위해, 꽤 좋은 결과를 얻은 한국의 논(2014–2018)을 추가로 매핑했다(R2=0.91). 이러한 결과는 딥 러닝 모델과 함께 사용되는 GSV 이미지가 세계의 많은 지역에서 지상 참조를 위한 효율적이고 비용 효율적인 대체 방법을 제공한다는 것을 나타낸다.1. Abstract 3 LIST OF FIGURES 9 LIST OF TABLES 13 ACKNOWLEDGEMENTS 14 Chapter I. Introduction 15 1.1. Study Background 15 1.2. Purpose of Research 15 Chapter II. Nocturnal stomatal conductance in rice: a coordinating bridge between prior respiration and photosynthesis next dawn 17 Abstract 17 1. Introduction 18 2. Materials and Methods 22 2.1 Plants and growth conditions 22 2.2 Leaf physiological traits 22 2.3 Rapid A/Ci response curves 24 2.4 Stomatal anatomy measurements 24 2.5 Statistical analyses 24 3. Results 25 3.1 Effects of abiotic stress on leaf traits 25 3.2 Nighttime leaf physiological traits 26 3.3 Significant priming effects of gsn on early morning photosynthesis (~5:00 – 7:00) 27 3.4 Path analyses only support the leaf trait coordination 28 3.5 Impacts of gsn on gsd and Amax under light-saturated conditions 29 3.6 Photosynthesis priming effects not detected after mid-morning (9:00) 31 4. Discussion 32 4.1 Abiotic stress results: Implications for different hypotheses 33 4.2 Enhanced carbon assimilation through coordinated regulation by gsn 34 4.3 Evaporative cooling: Passive thermoregulation via leaf trait coordination 36 References 37 Chapter III. Multi-objective optimization of crop yield, water consumption, and greenhouse gases emissions for sustainable rice production 42 Abstract 42 1. Introduction 43 2. Materials and methods 46 2.1 Study site 46 2.2 DNDC model 46 2.3 In situ data 47 2.4 Multi-objective optimization (MOO) algorithm 48 2.5 DNDC-NSGA-III integration and optimization 48 3. Results 50 3.1 DNDC model validation 50 3.2 The gaps between the current farming outcomes and optimized objectives 53 3.3 Approaching Pareto fronts through the heuristic and holistic management 55 3.4 The gaps between current farming practices to potential crop yield with optimal holistic management 56 4. Discussion 58 4.1 Could heuristic and holistic management increase current rice yield with less irrigation water? 58 4.2 Could heuristic and holistic management simultaneously reduce CH4 and N2O emissions? 59 4.3 Limitations and uncertainties 60 Reference 61 Chapter IV. Exploring Google Street View with Deep Learning for Crop Type Mapping 70 Abstract 70 1. Introduction 71 2. Materials and Methods 74 2.1 Study area 74 2.2 General methodology 75 2.3 Google Street View image collection 76 2.4 CNN model training and validation 77 2.5 Producing ground reference data and quality control 79 2.6 Mapping crop types 80 2.7 Mapping results evaluation 81 2.8 Additional test case 82 3. Results 83 3.1 GSV image classification 83 3.2 Producing ground reference data from classified GSV images 84 3.3 Mapping using the GSV derived ground reference 86 4. Discussion 96 4.1 Can we use GSV images to efficiently produce low-cost, sufficient, and reliable crop type ground reference data covering large areas? 96 4.2 Can we use GSV-derived reference data as “ground truth” to map crop types for large areas spanning many years? 97 Appendix 99 References 105 Chapter V. Conclusions 123 Supplementary Information Chapter II 125 Supplementary Information Chapter III 131 Supplementary Information Chapter IV 135 5. Abstract in Korean 138박

Sustainable Agriculture and Advances of Remote Sensing (Volume 1)

Agriculture, as the main source of alimentation and the most important economic activity globally, is being affected by the impacts of climate change. To maintain and increase our global food system production, to reduce biodiversity loss and preserve our natural ecosystem, new practices and technologies are required. This book focuses on the latest advances in remote sensing technology and agricultural engineering leading to the sustainable agriculture practices. Earth observation data, in situ and proxy-remote sensing data are the main source of information for monitoring and analyzing agriculture activities. Particular attention is given to earth observation satellites and the Internet of Things for data collection, to multispectral and hyperspectral data analysis using machine learning and deep learning, to WebGIS and the Internet of Things for sharing and publishing the results, among others

System Engineering Analyses for the Study of Future Multispectral Land Imaging Satellite Sensors for Vegetation Monitoring

Vegetation monitoring is one of the key applications of earth observing systems. Landsat data have spatial resolution of 30 meters, moderate temporal coverage, and reasonable spectral sampling to capture key vegetation features. These characteristics of Landsat make it a good candidate for generating vegetation monitoring products. Recently, the next satellite in the Landsat series has been under consideration and different concepts have been proposed. In this research, we studied the impact on vegetation monitoring of two proposed potential design concepts: a wider field-of-view (FOV) instrument and the addition of red-edge spectral band(s). Three aspects were studied in this thesis: First, inspired by the potential wider FOV design, the impacts of a detector relative spectral response (RSR) central wavelength shift effect at high angles of incidence (AOI) on the radiance signal were studied and quantified. Results indicate: 1) the RSR shift effect is band-dependent and more significant in the green, red and SWIR 2 bands; 2) At high AOI, the impact of the RSR shift effect will exceed sensor noise specifications in all bands except the SWIR 1 band; and 3) The RSR shift will cause SWIR2 band more to be sensitive to atmospheric conditions. Second, also inspired by the potential wider FOV design, the impacts of the potential new wider angular observations on vegetation monitoring scientific products were studied. Both crop classification and biophysical quantity retrieval applications were studied using the simulation code DIRSIG and the canopy radiative transfer model PROSAIL. It should be noted that the RSR shift effect was also considered. Results show that for single view observation based analysis, the higher view angular observations have limited influence on both applications. However, for situations where two different angular observations are available potentially from two platforms, up to 4% improvement for crop classification and 2.9% improvement for leaf chlorophyll content retrieval were found. Third, to quantify the benefits of a potential new design with red-edge band(s), the impact of adding red-edge spectral band(s) in future Landsat instruments on agroecosystem leaf area index (LAI) and canopy chlorophyll content (CCC) retrieval were studied using a real dataset. Three major retrieval approaches were tested, results show that a potential new spectral band located between the Landsat-8 Operational Land Imager (OLI) red and NIR bands slightly improved the retrieval accuracy (LAI: R2 of 0.787 vs. 0.810 for empirical vegetation index regression approach, 0.806 vs. 0.828 for look-up-table inversion approach, and 0.925 vs. 0.933 for machine learning approach; CCC: R2 of 0.853 vs. 0.875 for empirical vegetation index regression approach, 0.500 vs. 0.570 for look-up-table inversion approach, and 0.854 vs. 0.887 for machine learning approach). In general, for the potential wider FOV design, the RSR shift effect was found to cause noticable radiance signal difference that is higher than detector noise in all OLI bands except SWIR1 band, which is not observed in the current OLI design with its 15 degree FOV. Also both the new wider angular observations and potential red-edge band(s) were found to slightly improve the vegetation monitoring product accuracy. In the future, the RSR shift effect in other optical designs should be evaluated since this study assumed the angle reaching the filter array is the same as the angle reaching the sensor. In addition to improve the accuracy of the off angle imaging study, a 3D vegetation geometry model should be explored for vegetation monitoring related studies instead of the 2D PROSAIL model used in this thesis

Remote Sensing in Agriculture: State-of-the-Art

The Special Issue on “Remote Sensing in Agriculture: State-of-the-Art” gives an exhaustive overview of the ongoing remote sensing technology transfer into the agricultural sector. It consists of 10 high-quality papers focusing on a wide range of remote sensing models and techniques to forecast crop production and yield, to map agricultural landscape and to evaluate plant and soil biophysical features. Satellite, RPAS, and SAR data were involved. This preface describes shortly each contribution published in such Special Issue