7,738 research outputs found
Revealing networks from dynamics: an introduction
What can we learn from the collective dynamics of a complex network about its
interaction topology? Taking the perspective from nonlinear dynamics, we
briefly review recent progress on how to infer structural connectivity (direct
interactions) from accessing the dynamics of the units. Potential applications
range from interaction networks in physics, to chemical and metabolic
reactions, protein and gene regulatory networks as well as neural circuits in
biology and electric power grids or wireless sensor networks in engineering.
Moreover, we briefly mention some standard ways of inferring effective or
functional connectivity.Comment: Topical review, 48 pages, 7 figure
Optimized auxiliary oscillators for the simulation of general open quantum systems
A method for the systematic construction of few-body damped harmonic
oscillator networks accurately reproducing the effect of general bosonic
environments in open quantum systems is presented. Under the sole assumptions
of a Gaussian environment and regardless of the system coupled to it, an
algorithm to determine the parameters of an equivalent set of interacting
damped oscillators obeying a Markovian quantum master equation is introduced.
By choosing a suitable coupling to the system and minimizing an appropriate
distance between the two-time correlation function of this effective bath and
that of the target environment, the error induced in the reduced dynamics of
the system is brought under rigorous control. The interactions among the
effective modes provide remarkable flexibility in replicating non-Markovian
effects on the system even with a small number of oscillators, and the
resulting Lindblad equation may therefore be integrated at a very reasonable
computational cost using standard methods for Markovian problems, even in
strongly non-perturbative coupling regimes and at arbitrary temperatures
including zero. We apply the method to an exactly solvable problem in order to
demonstrate its accuracy, and present a study based on current research in the
context of coherent transport in biological aggregates as a more realistic
example of its use; performance and versatility are highlighted, and
theoretical and numerical advantages over existing methods, as well as possible
future improvements, are discussed.Comment: 23 + 9 pages, 11 + 2 figures. No changes from previous version except
publication info and updated author affiliation
Relaxation, thermalization and Markovian dynamics of two spins coupled to a spin bath
It is shown that by fitting a Markovian quantum master equation to the
numerical solution of the time-dependent Schr\"odinger equation of a system of
two spin-1/2 particles interacting with a bath of up to 34 spin-1/2 particles,
the former can describe the dynamics of the two-spin system rather well. The
fitting procedure that yields this Markovian quantum master equation accounts
for all non-Markovian effects in as much the general structure of this equation
allows and yields a description that is incompatible with the Lindblad
equation.Comment: arXiv admin note: text overlap with arXiv:1605.0660
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