Linguistic Reflection in Java

Reflective systems allow their own structures to be altered from within. Here we are concerned with a style of reflection, called linguistic reflection, which is the ability of a running program to generate new program fragments and to integrate these into its own execution. In particular we describe how this kind of reflection may be provided in the compiler-based, strongly typed object-oriented programming language Java. The advantages of the programming technique include attaining high levels of genericity and accommodating system evolution. These advantages are illustrated by an example taken from persistent programming which shows how linguistic reflection allows functionality (program code) to be generated on demand (Just-In-Time) from a generic specification and integrated into the evolving running program. The technique is evaluated against alternative implementation approaches with respect to efficiency, safety and ease of use.Comment: 25 pages. Source code for examples at http://www-ppg.dcs.st-and.ac.uk/Java/ReflectionExample/ Dynamic compilation package at http://www-ppg.dcs.st-and.ac.uk/Java/DynamicCompilation

Counterpart semantics for a second-order mu-calculus

We propose a novel approach to the semantics of quantified μ-calculi, considering models where states are algebras; the evolution relation is given by a counterpart relation (a family of partial homomorphisms), allowing for the creation, deletion, and merging of components; and formulas are interpreted over sets of state assignments (families of substitutions, associating formula variables to state components). Our proposal avoids the limitations of existing approaches, usually enforcing restrictions of the evolution relation: the resulting semantics is a streamlined and intuitively appealing one, yet it is general enough to cover most of the alternative proposals we are aware of

WIRIS OM tools: a semantic formula editor

With the increasing reliance on computers for the automatic processing of information a new method is needed for editing mathematical formulae. We are used to WYSIWYG editors that produce beautiful presentations of formulae and store the typesetting primitives rather than the meaning of the formulas. However, new services such as database searching or calculation web-services work best if they have access to the semantic information behind a formula. This can only be done with a new generation of formula editors. In this paper we present WIRIS OM Tools [17], a semantic oriented formula editor which addresses these concerns. It is based on the OpenMath language and a suitable transformation process between OpenMath and MathML ex- pressions. Additionally, this approach adds new features for the users such as error, type and syntax checking. The editor is currently being used in the LeActiveMath and WebALT projects

Session Communication and Integration

The scenario-based specification of a large distributed system is usually naturally decomposed into various modules. The integration of specification modules contrasts to the parallel composition of program components, and includes various ways such as scenario concatenation, choice, and nesting. The recent development of multiparty session types for process calculi provides useful techniques to accommodate the protocol modularisation, by encoding fragments of communication protocols in the usage of private channels for a class of agents. In this paper, we extend forgoing session type theories by enhancing the session integration mechanism. More specifically, we propose a novel synchronous multiparty session type theory, in which sessions are separated into the communicating and integrating levels. Communicating sessions record the message-based communications between multiple agents, whilst integrating sessions describe the integration of communicating ones. A two-level session type system is developed for pi-calculus with syntactic primitives for session establishment, and several key properties of the type system are studied. Applying the theory to system description, we show that a channel safety property and a session conformance property can be analysed. Also, to improve the utility of the theory, a process slicing method is used to help identify the violated sessions in the type checking.Comment: A short version of this paper is submitted for revie

Dynamically typed languages

Dynamically typed languages such as Python and Ruby have experienced a rapid grown in popularity in recent times. However, there is much confusion as to what makes these languages interesting relative to statically typed languages, and little knowledge of their rich history. In this chapter I explore the general topic of dynamically typed languages, how they differ from statically typed languages, their history, and their defining features

Interoperability and FAIRness through a novel combination of Web technologies

Data in the life sciences are extremely diverse and are stored in a broad spectrum of repositories ranging from those designed for particular data types (such as KEGG for pathway data or UniProt for protein data) to those that are general-purpose (such as FigShare, Zenodo, Dataverse or EUDAT). These data have widely different levels of sensitivity and security considerations. For example, clinical observations about genetic mutations in patients are highly sensitive, while observations of species diversity are generally not. The lack of uniformity in data models from one repository to another, and in the richness and availability of metadata descriptions, makes integration and analysis of these data a manual, time-consuming task with no scalability. Here we explore a set of resource-oriented Web design patterns for data discovery, accessibility, transformation, and integration that can be implemented by any general- or special-purpose repository as a means to assist users in finding and reusing their data holdings. We show that by using off-the-shelf technologies, interoperability can be achieved atthe level of an individual spreadsheet cell. We note that the behaviours of this architecture compare favourably to the desiderata defined by the FAIR Data Principles, and can therefore represent an exemplar implementation of those principles. The proposed interoperability design patterns may be used to improve discovery and integration of both new and legacy data, maximizing the utility of all scholarly outputs